| TF name | Position | PWM scan score |
| Nac | 55-69 | 12.188 |
| Ada | 279-306 | 12.062 |
| PhoB | 83-102 | 11.844 |
| OmpR | 210-229 | 11.717 |
| ArcA | 66-126 | 11.690 |
| PurR | 340-355 | 10.729 |
| NagC | 32-54 | 10.628 |
| IHF | 376-388 | 10.524 |
| Fur | 90-104 | 10.251 |
| SoxS | 50-67 | 9.973 |
| H-NS | 193-207 | 9.953 |
| NorR | 65-81 | 9.671 |
| UlaR | 303-322 | 9.274 |
| FNR | 363-384 | 9.041 |
| CRP | 63-84 | 8.925 |
| XylR | 375-392 | 8.670 |
| MetJ | 43-50 | 8.120 |
| NtrC | 267-283 | 8.088 |
| DeoR | 365-380 | 7.986 |
| Mlc | 347-369 | 7.974 |
| ArgP | 115-127 | 7.974 |
| CpxR | 109-123 | 7.911 |
| Rob | 191-211 | 7.803 |
| Lrp | 190-201 | 7.651 |
| TorR | 34-43 | 7.314 |
| GadE | 80-99 | 7.192 |
| GntR | 358-377 | 7.109 |
| IdnR | 102-117 | 6.866 |
| AgaR | 345-368 | 6.767 |
| NarL | 95-101 | 6.718 |
| Fis | 143-163 | 6.443 |
| ModE | 142-168 | 6.379 |
| RcsB | 344-357 | 6.063 |
| MalT | 263-272 | 5.927 |
| LacI | 238-258 | 5.925 |
| PspF | 59-75 | 5.797 |
| DnaA | 83-91 | 5.342 |
| UxuR | 68-85 | 5.141 |
| GlpR | 362-381 | 5.081 |
| MetR | 313-336 | 5.071 |
| OxyR | 98-142 | 5.032 |