| TF name | Position | PWM scan score |
| NorR | 334-350 | 11.819 |
| OmpR | 376-395 | 11.102 |
| FhlA | 181-220 | 10.808 |
| PhoB | 21-40 | 10.211 |
| DnaA | 277-285 | 9.831 |
| TorR | 375-384 | 9.594 |
| FNR | 175-196 | 9.484 |
| CpxR | 312-326 | 9.026 |
| MelR | 66-83 | 8.859 |
| OxyR | 56-100 | 8.377 |
| SoxS | 301-318 | 8.307 |
| Rob | 326-346 | 8.031 |
| AraC | 193-210 | 7.826 |
| ArcA | 52-112 | 7.818 |
| MetJ | 83-90 | 7.811 |
| NarL | 308-314 | 7.740 |
| H-NS | 234-248 | 7.614 |
| GntR | 139-158 | 7.570 |
| Lrp | 181-192 | 7.560 |
| GlpR | 352-371 | 7.440 |
| Nac | 271-285 | 7.406 |
| GalS | 2-17 | 7.183 |
| GalR | 2-17 | 7.183 |
| NagC | 77-99 | 7.006 |
| XylR | 131-148 | 6.919 |
| GadE | 251-270 | 6.539 |
| GcvA | 336-364 | 6.517 |
| DeoR | 302-317 | 6.377 |
| RhaS | 219-235 | 6.344 |
| Fis | 83-103 | 6.256 |
| IHF | 283-295 | 6.079 |
| ArgP | 278-290 | 6.062 |
| RcsB | 134-147 | 5.809 |
| MetR | 77-100 | 5.632 |
| NarP | 223-229 | 5.627 |
| PhoP | 69-85 | 5.367 |
| AgaR | 369-392 | 5.366 |
| MalT | 45-54 | 5.366 |
| CRP | 127-148 | 5.192 |
| NtrC | 231-247 | 5.077 |
| UxuR | 91-108 | 5.018 |