| TF name | Position | PWM scan score |
| GlpR | 239-258 | 11.921 |
| MelR | 162-179 | 10.291 |
| LacI | 280-300 | 10.004 |
| RhaS | 33-49 | 9.220 |
| IHF | 236-248 | 9.113 |
| FNR | 341-362 | 8.975 |
| IdnR | 232-247 | 8.247 |
| Lrp | 275-286 | 8.037 |
| CRP | 239-260 | 8.034 |
| ArgP | 241-253 | 8.030 |
| CueR | 114-132 | 7.975 |
| MetJ | 361-368 | 7.893 |
| Nac | 228-242 | 7.843 |
| H-NS | 240-254 | 7.810 |
| NarL | 308-314 | 7.740 |
| TorR | 76-85 | 7.571 |
| OmpR | 342-361 | 7.550 |
| TyrR | 236-257 | 7.464 |
| DnaA | 298-306 | 7.376 |
| SoxS | 252-269 | 7.298 |
| Fis | 237-257 | 7.117 |
| RcsB | 225-238 | 6.996 |
| PurR | 251-266 | 6.766 |
| MarA | 250-270 | 6.722 |
| NarP | 83-89 | 6.654 |
| MalT | 135-144 | 6.528 |
| AraC | 65-82 | 6.486 |
| DeoR | 65-80 | 6.097 |
| UxuR | 98-115 | 5.997 |
| XylR | 239-256 | 5.792 |
| ModE | 341-367 | 5.696 |
| NagC | 227-249 | 5.055 |
| GcvA | 337-365 | 5.051 |