| TF name | Position | PWM scan score |
| GlpR | 248-267 | 15.130 |
| CysB | 103-144 | 13.915 |
| PurR | 238-253 | 13.456 |
| CpxR | 282-296 | 12.702 |
| ArgR | 212-227 | 11.649 |
| OmpR | 21-40 | 11.493 |
| MelR | 257-274 | 10.327 |
| TyrR | 280-301 | 10.271 |
| ArcA | 263-323 | 10.037 |
| CRP | 136-157 | 9.729 |
| NagC | 223-245 | 9.647 |
| H-NS | 265-279 | 9.547 |
| Mlc | 223-245 | 9.512 |
| RcsB | 241-254 | 8.929 |
| DnaA | 292-300 | 8.717 |
| SoxS | 204-221 | 8.413 |
| Lrp | 240-251 | 8.249 |
| AraC | 148-165 | 8.190 |
| GadE | 117-136 | 8.169 |
| IHF | 237-249 | 8.008 |
| LacI | 50-70 | 8.005 |
| ArgP | 289-301 | 7.961 |
| NarL | 40-46 | 7.740 |
| MetR | 209-232 | 7.738 |
| IdnR | 15-30 | 7.032 |
| PspF | 276-292 | 6.562 |
| UlaR | 255-274 | 6.528 |
| PhoP | 36-52 | 6.469 |
| FNR | 290-311 | 6.221 |
| GcvA | 17-45 | 6.022 |
| Nac | 12-26 | 5.921 |
| PhoB | 209-228 | 5.909 |
| MalT | 148-157 | 5.893 |
| MarA | 187-207 | 5.882 |
| Fis | 13-33 | 5.752 |
| GalR | 238-253 | 5.697 |
| GalS | 238-253 | 5.697 |
| DeoR | 282-297 | 5.544 |
| CueR | 69-87 | 5.101 |
| UxuR | 103-120 | 5.022 |