| TF name | Position | PWM scan score |
| GlpR | 284-303 | 13.634 |
| RcsB | 304-317 | 12.474 |
| IHF | 239-251 | 11.675 |
| SoxS | 233-250 | 10.971 |
| Mlc | 310-332 | 10.582 |
| ArcA | 271-331 | 10.427 |
| PhoB | 273-292 | 9.974 |
| NtrC | 358-374 | 9.543 |
| FruR | 113-130 | 8.534 |
| MalT | 166-175 | 8.502 |
| H-NS | 260-274 | 8.424 |
| ArgR | 300-315 | 8.348 |
| CRP | 331-352 | 7.983 |
| CytR | 327-366 | 7.906 |
| TorR | 5-14 | 7.835 |
| AgaR | 67-90 | 7.749 |
| Ada | 61-88 | 7.085 |
| TyrR | 276-297 | 7.082 |
| Rob | 213-233 | 7.078 |
| MetJ | 196-203 | 6.925 |
| OmpR | 270-289 | 6.907 |
| IdnR | 15-30 | 6.854 |
| UlaR | 14-33 | 6.276 |
| DeoR | 258-273 | 6.208 |
| Nac | 312-326 | 6.050 |
| XylR | 303-320 | 5.881 |
| PhoP | 7-23 | 5.863 |
| LacI | 248-268 | 5.801 |
| Lrp | 329-340 | 5.639 |
| AraC | 276-293 | 5.437 |
| Fis | 253-273 | 5.187 |
| NagC | 314-336 | 5.164 |
| GcvA | 325-353 | 5.134 |
| ArgP | 350-362 | 5.126 |
| GntR | 245-264 | 5.124 |
| CueR | 119-137 | 5.014 |