| TF name | Position | PWM scan score |
| TorR | 338-347 | 13.513 |
| PurR | 97-112 | 11.920 |
| ArgR | 25-40 | 11.650 |
| CysB | 340-381 | 10.587 |
| PhoB | 255-274 | 10.163 |
| CRP | 327-348 | 9.733 |
| FNR | 368-389 | 9.609 |
| Ada | 155-182 | 9.588 |
| RcsB | 71-84 | 9.028 |
| ArcA | 322-382 | 9.016 |
| ArgP | 373-385 | 8.906 |
| Nac | 276-290 | 8.872 |
| Mlc | 357-379 | 8.653 |
| Fis | 277-297 | 8.605 |
| DeoR | 271-286 | 8.279 |
| IHF | 374-386 | 8.254 |
| CytR | 360-399 | 8.105 |
| AgaR | 285-308 | 7.922 |
| NorR | 190-206 | 7.902 |
| MalT | 86-95 | 7.894 |
| SoxS | 271-288 | 7.705 |
| PhoP | 271-287 | 7.640 |
| CpxR | 344-358 | 7.529 |
| GcvA | 284-312 | 7.476 |
| DnaA | 337-345 | 7.209 |
| NarP | 221-227 | 7.091 |
| Lrp | 264-275 | 7.084 |
| NarL | 216-222 | 7.080 |
| RhaS | 96-112 | 6.882 |
| Rob | 47-67 | 6.796 |
| MelR | 128-145 | 6.253 |
| XylR | 301-318 | 5.567 |
| AraC | 71-88 | 5.379 |
| H-NS | 373-387 | 5.293 |
| ModE | 206-232 | 5.256 |
| GalR | 97-112 | 5.182 |
| GalS | 97-112 | 5.182 |