| TF name | Position | PWM scan score |
| RhaS | 54-70 | 10.899 |
| IdnR | 218-233 | 10.526 |
| RcsB | 207-220 | 9.611 |
| Fis | 27-47 | 9.514 |
| OmpR | 269-288 | 9.443 |
| DnaA | 114-122 | 9.181 |
| H-NS | 269-283 | 9.038 |
| NarP | 261-267 | 8.877 |
| Nac | 107-121 | 8.609 |
| CpxR | 77-91 | 8.327 |
| Rob | 34-54 | 8.213 |
| FNR | 163-184 | 7.967 |
| PhoB | 270-289 | 7.964 |
| IHF | 172-184 | 7.786 |
| DeoR | 275-290 | 7.547 |
| Lrp | 188-199 | 7.544 |
| CRP | 250-271 | 7.500 |
| CysB | 173-214 | 7.481 |
| ArgP | 205-217 | 7.419 |
| PhoP | 21-37 | 7.228 |
| NagC | 269-291 | 7.094 |
| MetJ | 233-240 | 7.046 |
| SoxS | 338-355 | 6.895 |
| Fur | 37-51 | 6.465 |
| LacI | 284-304 | 6.463 |
| GadE | 270-289 | 6.325 |
| NtrC | 137-153 | 6.300 |
| NarL | 367-373 | 6.294 |
| PurR | 266-281 | 6.146 |
| AraC | 136-153 | 5.988 |
| GcvA | 105-133 | 5.820 |
| ModE | 37-63 | 5.700 |
| GlpR | 143-162 | 5.566 |
| ArcA | 69-129 | 5.485 |
| AgaR | 61-84 | 5.439 |
| MalT | 90-99 | 5.273 |
| MelR | 310-327 | 5.196 |