| TF name | Position | PWM scan score |
| CysB | 351-392 | 11.102 |
| IdnR | 35-50 | 10.526 |
| H-NS | 379-393 | 10.066 |
| RcsB | 24-37 | 9.611 |
| OmpR | 86-105 | 9.443 |
| NarP | 78-84 | 8.877 |
| SoxS | 317-334 | 8.515 |
| FNR | 216-237 | 8.422 |
| AraC | 344-361 | 8.377 |
| RhaS | 305-321 | 8.240 |
| PhoB | 87-106 | 7.964 |
| DeoR | 92-107 | 7.547 |
| Lrp | 5-16 | 7.544 |
| PhoP | 378-394 | 7.525 |
| CRP | 67-88 | 7.500 |
| XylR | 326-343 | 7.496 |
| FadR | 346-362 | 7.427 |
| ArgP | 22-34 | 7.419 |
| GadE | 371-390 | 7.268 |
| NagC | 86-108 | 7.094 |
| MetJ | 50-57 | 7.046 |
| NorR | 273-289 | 7.004 |
| Fis | 217-237 | 6.654 |
| DnaA | 367-375 | 6.605 |
| LacI | 101-121 | 6.463 |
| ArcA | 314-374 | 6.387 |
| ArgR | 375-390 | 6.381 |
| NarL | 184-190 | 6.294 |
| PurR | 83-98 | 6.146 |
| Rob | 375-395 | 5.992 |
| LexA | 217-236 | 5.778 |
| IHF | 368-380 | 5.759 |
| MelR | 127-144 | 5.196 |
| Nac | 216-230 | 5.188 |
| GalR | 238-253 | 5.152 |
| GalS | 238-253 | 5.152 |
| NtrC | 154-170 | 5.098 |