| TF name | Position | PWM scan score |
| PhoP | 238-254 | 9.947 |
| FadR | 127-143 | 9.925 |
| CpxR | 176-190 | 9.521 |
| H-NS | 286-300 | 9.118 |
| RcsB | 318-331 | 9.087 |
| GadE | 187-206 | 8.635 |
| Fis | 154-174 | 8.619 |
| Lrp | 194-205 | 8.606 |
| SoxS | 289-306 | 8.528 |
| GlpR | 294-313 | 8.256 |
| LacI | 51-71 | 7.993 |
| MarA | 287-307 | 7.904 |
| ArgP | 300-312 | 7.887 |
| UxuR | 170-187 | 7.780 |
| Rob | 168-188 | 7.744 |
| IHF | 313-325 | 7.618 |
| PspF | 138-154 | 7.414 |
| NarP | 314-320 | 7.162 |
| NarL | 330-336 | 7.107 |
| OmpR | 334-353 | 6.913 |
| AraC | 314-331 | 6.911 |
| FruR | 12-29 | 6.906 |
| MalT | 154-163 | 6.731 |
| XylR | 313-330 | 6.724 |
| PhoB | 197-216 | 6.719 |
| OxyR | 21-65 | 6.681 |
| DnaA | 323-331 | 6.605 |
| GcvA | 166-194 | 6.461 |
| GntR | 320-339 | 6.262 |
| Mlc | 226-248 | 6.172 |
| NagC | 6-28 | 6.082 |
| Nac | 321-335 | 6.059 |
| ModE | 142-168 | 5.859 |
| ArcA | 298-358 | 5.842 |
| CytR | 316-355 | 5.796 |
| MetR | 119-142 | 5.710 |
| DeoR | 185-200 | 5.637 |
| UlaR | 239-258 | 5.515 |
| TorR | 236-245 | 5.327 |
| IdnR | 226-241 | 5.203 |
| FNR | 325-346 | 5.054 |