| TF name | Position | PWM scan score |
| MarA | 280-300 | 10.643 |
| UlaR | 202-221 | 10.489 |
| XylR | 88-105 | 9.490 |
| GalS | 218-233 | 9.302 |
| GalR | 218-233 | 9.302 |
| UxuR | 186-203 | 8.189 |
| Fur | 254-268 | 8.000 |
| Nac | 198-212 | 7.861 |
| TorR | 331-340 | 7.821 |
| CueR | 30-48 | 7.355 |
| OxyR | 328-372 | 7.233 |
| MalT | 79-88 | 7.195 |
| H-NS | 213-227 | 7.103 |
| FadR | 156-172 | 6.971 |
| GadE | 288-307 | 6.803 |
| FNR | 332-353 | 6.140 |
| Lrp | 88-99 | 6.122 |
| PhoB | 134-153 | 5.923 |
| SoxS | 282-299 | 5.906 |
| ArgP | 287-299 | 5.681 |
| PurR | 218-233 | 5.550 |
| LacI | 254-274 | 5.524 |
| NorR | 294-310 | 5.312 |
| MetJ | 224-231 | 5.309 |
| Fis | 285-305 | 5.281 |
| NarL | 56-62 | 5.210 |
| NtrC | 193-209 | 5.085 |