| TF name | Position | PWM scan score |
| OmpR | 375-394 | 10.670 |
| LacI | 143-163 | 10.359 |
| MetJ | 10-17 | 10.216 |
| ArgP | 356-368 | 9.625 |
| NarP | 245-251 | 8.877 |
| Rob | 27-47 | 8.551 |
| GadE | 375-394 | 7.833 |
| TorR | 163-172 | 7.821 |
| MalT | 4-13 | 7.814 |
| ArgR | 353-368 | 7.306 |
| FadR | 192-208 | 7.213 |
| Lrp | 300-311 | 7.132 |
| DeoR | 139-154 | 7.085 |
| CRP | 21-42 | 6.496 |
| FNR | 183-204 | 6.404 |
| NarL | 310-316 | 6.305 |
| NorR | 343-359 | 6.290 |
| ArcA | 320-380 | 6.070 |
| IHF | 114-126 | 6.010 |
| IdnR | 47-62 | 5.877 |
| ModE | 350-376 | 5.871 |
| GlpR | 377-396 | 5.826 |
| OxyR | 146-190 | 5.744 |
| Nac | 349-363 | 5.552 |
| H-NS | 302-316 | 5.529 |
| MetR | 226-249 | 5.371 |
| Fis | 127-147 | 5.363 |
| PurR | 230-245 | 5.114 |