| TF name | Position | PWM scan score |
| XylR | 276-293 | 12.990 |
| MetJ | 73-80 | 11.073 |
| NagC | 285-307 | 10.880 |
| AraC | 46-63 | 9.724 |
| MarA | 85-105 | 9.157 |
| LacI | 214-234 | 8.978 |
| AgaR | 151-174 | 8.763 |
| OmpR | 280-299 | 8.419 |
| H-NS | 302-316 | 8.265 |
| MalT | 30-39 | 8.209 |
| NarL | 202-208 | 8.169 |
| IHF | 278-290 | 8.016 |
| Lrp | 283-294 | 7.491 |
| FruR | 132-149 | 7.471 |
| DnaA | 154-162 | 7.375 |
| ArcA | 264-324 | 7.294 |
| ArgR | 21-36 | 7.273 |
| GntR | 111-130 | 6.825 |
| ModE | 258-284 | 6.451 |
| RcsB | 281-294 | 6.427 |
| MelR | 174-191 | 6.297 |
| DeoR | 243-258 | 6.263 |
| PhoB | 292-311 | 6.254 |
| Rob | 135-155 | 6.111 |
| CpxR | 175-189 | 6.013 |
| GlpR | 110-129 | 5.842 |
| PhoP | 252-268 | 5.595 |
| Nac | 116-130 | 5.476 |
| TorR | 155-164 | 5.463 |
| FNR | 264-285 | 5.275 |
| RhaS | 306-322 | 5.050 |