| TF name | Position | PWM scan score |
| NagC | 204-226 | 9.514 |
| IHF | 72-84 | 9.400 |
| FruR | 151-168 | 8.892 |
| ArgR | 237-252 | 8.403 |
| ArgP | 257-269 | 7.974 |
| GntR | 304-323 | 7.744 |
| NarL | 172-178 | 7.577 |
| TorR | 350-359 | 7.526 |
| MarA | 130-150 | 7.490 |
| Nac | 245-259 | 7.414 |
| CueR | 106-124 | 7.376 |
| DnaA | 80-88 | 7.376 |
| Lrp | 258-269 | 7.197 |
| MalT | 160-169 | 7.174 |
| CysB | 352-393 | 7.107 |
| H-NS | 1-15 | 7.070 |
| NtrC | 157-173 | 7.037 |
| Fur | 383-397 | 7.003 |
| MetJ | 298-305 | 6.600 |
| LexA | 52-71 | 6.201 |
| PhoP | 68-84 | 6.053 |
| MetR | 83-106 | 5.963 |
| NarP | 31-37 | 5.627 |
| PhoB | 254-273 | 5.440 |
| OmpR | 58-77 | 5.414 |
| FNR | 82-103 | 5.392 |
| ModE | 63-89 | 5.362 |
| GlpR | 375-394 | 5.338 |
| CRP | 129-150 | 5.183 |