| TF name | Position | PWM scan score |
| UxuR | 274-291 | 15.882 |
| PhoB | 186-205 | 14.897 |
| RcsB | 365-378 | 12.799 |
| RhaS | 129-145 | 11.920 |
| MarA | 265-285 | 10.365 |
| NagC | 375-397 | 9.871 |
| GalR | 235-250 | 9.736 |
| GalS | 235-250 | 9.736 |
| Mlc | 373-395 | 9.247 |
| GntR | 350-369 | 9.091 |
| Fur | 93-107 | 8.684 |
| ArcA | 247-307 | 8.597 |
| FNR | 7-28 | 8.574 |
| PurR | 361-376 | 8.048 |
| MalT | 39-48 | 7.937 |
| MetR | 8-31 | 7.832 |
| OxyR | 259-303 | 7.304 |
| GlpR | 343-362 | 7.094 |
| AraC | 359-376 | 7.007 |
| SoxS | 72-89 | 6.801 |
| Fis | 214-234 | 6.777 |
| XylR | 308-325 | 6.709 |
| ModE | 344-370 | 6.473 |
| TrpR | 272-289 | 6.420 |
| TyrR | 359-380 | 6.167 |
| H-NS | 313-327 | 6.153 |
| OmpR | 259-278 | 6.145 |
| CpxR | 279-293 | 6.126 |
| NarL | 260-266 | 6.105 |
| Ada | 350-377 | 5.961 |
| Lrp | 4-15 | 5.845 |
| GadE | 280-299 | 5.796 |
| IHF | 367-379 | 5.687 |
| PhoP | 337-353 | 5.635 |
| TorR | 336-345 | 5.587 |
| CRP | 4-25 | 5.516 |
| ArgP | 141-153 | 5.481 |
| GcvA | 255-283 | 5.413 |