| TF name | Position | PWM scan score |
| ArcA | 213-273 | 38.586 |
| OmpR | 124-143 | 23.432 |
| CysB | 333-374 | 21.799 |
| PhoB | 125-144 | 19.310 |
| H-NS | 254-268 | 18.690 |
| Ada | 57-84 | 18.472 |
| Mlc | 107-129 | 17.710 |
| OxyR | 34-78 | 17.502 |
| TyrR | 305-326 | 17.039 |
| PhoP | 131-147 | 17.025 |
| CytR | 307-346 | 16.692 |
| CRP | 342-363 | 16.107 |
| NagC | 329-351 | 16.033 |
| Fis | 127-147 | 16.026 |
| GadE | 344-363 | 16.024 |
| FNR | 180-201 | 15.963 |
| GcvA | 361-389 | 15.326 |
| DcuR | 29-83 | 15.211 |
| IdnR | 95-110 | 15.210 |
| Fur | 210-224 | 14.899 |
| MarA | 127-147 | 14.797 |
| ArgP | 211-223 | 14.789 |
| ArgR | 121-136 | 14.049 |
| MetR | 330-353 | 14.001 |
| CpxR | 155-169 | 13.662 |
| Rob | 365-385 | 13.546 |
| GalS | 98-113 | 13.064 |
| GalR | 98-113 | 13.064 |
| PspF | 216-232 | 12.750 |
| UxuR | 49-66 | 12.697 |
| AgaR | 178-201 | 12.666 |
| DnaA | 187-195 | 12.507 |
| IHF | 376-388 | 12.385 |
| DeoR | 54-69 | 11.984 |
| Nac | 365-379 | 11.951 |
| GntR | 106-125 | 11.820 |
| AraC | 361-378 | 11.742 |
| TorR | 314-323 | 11.140 |
| Lrp | 369-380 | 11.121 |
| ModE | 126-152 | 10.469 |
| UlaR | 345-364 | 10.253 |
| XylR | 44-61 | 10.218 |
| SoxS | 240-257 | 10.072 |
| MelR | 340-357 | 9.826 |
| RcsB | 133-146 | 9.626 |
| GlpR | 339-358 | 9.537 |
| NarL | 257-263 | 9.444 |
| NorR | 209-225 | 9.426 |
| CaiF | 14-58 | 8.914 |
| LexA | 359-378 | 8.636 |
| PurR | 65-80 | 8.611 |
| FhlA | 245-284 | 7.497 |
| LacI | 309-329 | 7.251 |
| CueR | 249-267 | 7.051 |
| NarP | 242-248 | 6.591 |
| FadR | 253-269 | 5.831 |
| MetJ | 154-161 | 5.696 |
| FruR | 130-147 | 5.680 |
| MalT | 239-248 | 5.303 |