| TF name | Position | PWM scan score |
| ArcA | 95-155 | 32.612 |
| CysB | 289-330 | 23.255 |
| CytR | 282-321 | 22.901 |
| OxyR | 296-340 | 21.605 |
| AgaR | 164-187 | 18.472 |
| NagC | 270-292 | 18.217 |
| PhoB | 164-183 | 17.042 |
| OmpR | 163-182 | 16.827 |
| Mlc | 260-282 | 16.673 |
| GcvA | 113-141 | 16.498 |
| UlaR | 169-188 | 15.944 |
| H-NS | 52-66 | 15.911 |
| DcuR | 266-320 | 15.785 |
| SoxS | 304-321 | 15.751 |
| FNR | 280-301 | 15.342 |
| CpxR | 366-380 | 15.310 |
| Fis | 230-250 | 15.216 |
| PhoP | 173-189 | 15.095 |
| IHF | 355-367 | 14.682 |
| RcsB | 355-368 | 14.676 |
| CRP | 140-161 | 14.276 |
| Fur | 355-369 | 14.195 |
| XylR | 260-277 | 13.874 |
| TyrR | 111-132 | 13.787 |
| MetR | 359-382 | 13.358 |
| Nac | 229-243 | 13.033 |
| ArgR | 292-307 | 12.665 |
| ArgP | 9-21 | 12.176 |
| MelR | 128-145 | 11.942 |
| Ada | 186-213 | 11.834 |
| IdnR | 261-276 | 11.809 |
| GadE | 118-137 | 11.775 |
| GlpR | 321-340 | 11.681 |
| NtrC | 18-34 | 11.084 |
| DeoR | 347-362 | 10.617 |
| NarL | 100-106 | 10.377 |
| NorR | 142-158 | 10.309 |
| GntR | 369-388 | 10.219 |
| FruR | 328-345 | 9.954 |
| UxuR | 285-302 | 9.934 |
| Lrp | 134-145 | 9.720 |
| PspF | 339-355 | 9.641 |
| AraC | 95-112 | 9.566 |
| FhlA | 137-176 | 9.341 |
| ModE | 166-192 | 9.015 |
| Rob | 76-96 | 8.721 |
| DnaA | 12-20 | 8.618 |
| TorR | 120-129 | 8.601 |
| FadR | 161-177 | 8.545 |
| MarA | 156-176 | 8.361 |
| GalS | 36-51 | 7.945 |
| GalR | 36-51 | 7.945 |
| MetJ | 319-326 | 7.171 |
| TrpR | 213-230 | 6.659 |
| MalT | 21-30 | 6.461 |
| CueR | 148-166 | 6.339 |
| NarP | 95-101 | 6.229 |
| LacI | 213-233 | 5.985 |