| TF name | Position | PWM scan score |
| ArcA | 227-287 | 24.789 |
| NagC | 19-41 | 19.805 |
| CysB | 190-231 | 18.820 |
| GcvA | 221-249 | 16.742 |
| CytR | 206-245 | 16.518 |
| DeoR | 381-396 | 16.045 |
| Mlc | 377-399 | 15.760 |
| OxyR | 34-78 | 14.928 |
| PhoB | 261-280 | 14.878 |
| RcsB | 202-215 | 14.610 |
| CRP | 271-292 | 14.509 |
| FNR | 304-325 | 14.050 |
| OmpR | 182-201 | 13.936 |
| CpxR | 381-395 | 13.837 |
| IHF | 319-331 | 13.531 |
| Fur | 369-383 | 13.243 |
| LexA | 373-392 | 13.012 |
| AgaR | 368-391 | 12.651 |
| Rob | 283-303 | 12.605 |
| Fis | 228-248 | 12.586 |
| Nac | 308-322 | 12.387 |
| SoxS | 192-209 | 12.374 |
| TyrR | 377-398 | 12.261 |
| AraC | 13-30 | 12.207 |
| CaiF | 15-59 | 12.011 |
| IdnR | 378-393 | 11.987 |
| UlaR | 250-269 | 11.425 |
| PhoP | 157-173 | 11.233 |
| H-NS | 201-215 | 11.212 |
| Lrp | 375-386 | 11.142 |
| DnaA | 230-238 | 10.881 |
| TorR | 246-255 | 10.608 |
| PspF | 267-283 | 10.534 |
| UxuR | 240-257 | 10.451 |
| Ada | 169-196 | 10.300 |
| DcuR | 158-212 | 10.124 |
| FruR | 181-198 | 10.030 |
| GntR | 253-272 | 9.880 |
| GlpR | 309-328 | 9.862 |
| MetJ | 289-296 | 9.765 |
| ModE | 172-198 | 9.686 |
| FadR | 242-258 | 9.594 |
| MelR | 196-213 | 9.270 |
| XylR | 377-394 | 9.179 |
| ArgP | 170-182 | 9.096 |
| GadE | 184-203 | 8.851 |
| ArgR | 264-279 | 8.457 |
| MetR | 234-257 | 8.237 |
| NtrC | 344-360 | 7.930 |
| NarL | 241-247 | 7.337 |
| NorR | 374-390 | 7.257 |
| MalT | 280-289 | 7.045 |
| FhlA | 169-208 | 6.846 |
| LacI | 237-257 | 6.395 |
| MarA | 361-381 | 5.834 |
| NarP | 214-220 | 5.342 |
| PurR | 87-102 | 5.247 |
| TrpR | 115-132 | 5.116 |