| TF name | Position | PWM scan score |
| ArcA | 252-312 | 27.329 |
| OxyR | 330-374 | 23.519 |
| AgaR | 74-97 | 19.662 |
| UlaR | 268-287 | 18.976 |
| NagC | 23-45 | 18.374 |
| CRP | 255-276 | 18.299 |
| DcuR | 293-347 | 16.882 |
| CytR | 39-78 | 16.820 |
| CysB | 348-389 | 16.785 |
| FNR | 347-368 | 16.040 |
| PspF | 302-318 | 15.785 |
| OmpR | 358-377 | 15.196 |
| H-NS | 36-50 | 14.899 |
| Mlc | 41-63 | 14.825 |
| GlpR | 41-60 | 14.188 |
| IHF | 69-81 | 14.153 |
| RcsB | 259-272 | 13.741 |
| Rob | 225-245 | 13.306 |
| Fis | 130-150 | 12.989 |
| MarA | 56-76 | 12.681 |
| Ada | 73-100 | 12.009 |
| GcvA | 366-394 | 11.972 |
| LexA | 62-81 | 11.897 |
| ArgR | 164-179 | 11.810 |
| MetR | 341-364 | 11.709 |
| XylR | 350-367 | 11.692 |
| PhoB | 45-64 | 11.634 |
| GadE | 376-395 | 11.523 |
| UxuR | 130-147 | 11.186 |
| Lrp | 39-50 | 11.108 |
| GntR | 229-248 | 10.692 |
| ArgP | 74-86 | 10.636 |
| PhoP | 32-48 | 10.612 |
| Nac | 260-274 | 10.546 |
| CpxR | 275-289 | 10.439 |
| NorR | 227-243 | 9.973 |
| IdnR | 328-343 | 9.660 |
| ModE | 262-288 | 9.628 |
| NarL | 173-179 | 9.580 |
| SoxS | 329-346 | 9.105 |
| DeoR | 285-300 | 8.669 |
| TyrR | 33-54 | 8.535 |
| AraC | 70-87 | 8.503 |
| DnaA | 68-76 | 8.304 |
| RhaS | 182-198 | 8.247 |
| MelR | 351-368 | 8.173 |
| TorR | 94-103 | 8.078 |
| MetJ | 126-133 | 7.710 |
| FruR | 34-51 | 7.577 |
| FadR | 35-51 | 7.403 |
| MalT | 8-17 | 7.036 |
| LacI | 190-210 | 6.771 |
| NarP | 372-378 | 6.591 |
| Fur | 342-356 | 6.318 |
| PurR | 132-147 | 5.069 |