| TF name | Position | PWM scan score |
| ArcA | 308-368 | 35.065 |
| CytR | 334-373 | 23.784 |
| CysB | 338-379 | 23.434 |
| OmpR | 344-363 | 18.720 |
| Fis | 268-288 | 18.067 |
| H-NS | 333-347 | 17.314 |
| PhoP | 340-356 | 17.019 |
| DcuR | 326-380 | 16.786 |
| NagC | 309-331 | 16.388 |
| Mlc | 336-358 | 16.339 |
| CRP | 346-367 | 16.095 |
| PhoB | 80-99 | 15.948 |
| UlaR | 337-356 | 15.877 |
| GadE | 240-259 | 15.614 |
| UxuR | 293-310 | 15.356 |
| FNR | 349-370 | 15.151 |
| AgaR | 332-355 | 15.127 |
| OxyR | 323-367 | 15.044 |
| SoxS | 309-326 | 14.935 |
| Rob | 331-351 | 14.798 |
| RcsB | 139-152 | 14.730 |
| DeoR | 109-124 | 14.596 |
| GcvA | 327-355 | 14.505 |
| GlpR | 123-142 | 13.580 |
| TyrR | 259-280 | 13.397 |
| CpxR | 68-82 | 13.337 |
| MarA | 106-126 | 13.336 |
| ArgR | 181-196 | 13.137 |
| MelR | 248-265 | 13.008 |
| IHF | 355-367 | 12.461 |
| AraC | 187-204 | 12.355 |
| ArgP | 350-362 | 12.295 |
| GntR | 344-363 | 12.234 |
| PspF | 171-187 | 12.216 |
| Fur | 3-17 | 12.111 |
| Nac | 363-377 | 11.190 |
| Lrp | 237-248 | 10.777 |
| NorR | 210-226 | 10.487 |
| XylR | 329-346 | 10.407 |
| NarL | 366-372 | 10.377 |
| Ada | 123-150 | 9.904 |
| ModE | 335-361 | 9.796 |
| TorR | 182-191 | 9.785 |
| LexA | 348-367 | 9.202 |
| MetR | 350-373 | 9.193 |
| MalT | 163-172 | 9.142 |
| NarP | 88-94 | 8.594 |
| MetJ | 154-161 | 8.430 |
| FhlA | 224-263 | 8.062 |
| DnaA | 185-193 | 7.532 |
| FruR | 297-314 | 7.214 |
| LacI | 91-111 | 6.217 |
| NtrC | 127-143 | 6.180 |