| TF name | Position | PWM scan score |
| ArcA | 156-216 | 21.555 |
| AgaR | 348-371 | 17.081 |
| Fis | 30-50 | 15.474 |
| OxyR | 339-383 | 15.323 |
| MelR | 250-267 | 15.271 |
| NagC | 260-282 | 15.180 |
| CytR | 358-397 | 14.642 |
| FNR | 366-387 | 13.608 |
| DeoR | 33-48 | 13.112 |
| ArgP | 111-123 | 12.306 |
| IHF | 261-273 | 11.960 |
| GadE | 68-87 | 11.766 |
| Ada | 189-216 | 11.643 |
| LexA | 271-290 | 11.537 |
| Nac | 39-53 | 11.452 |
| PhoB | 210-229 | 11.417 |
| GcvA | 290-318 | 10.961 |
| CysB | 30-71 | 10.916 |
| IdnR | 204-219 | 10.748 |
| H-NS | 210-224 | 10.474 |
| PspF | 257-273 | 10.336 |
| Fur | 149-163 | 10.224 |
| LacI | 349-369 | 10.125 |
| MalT | 90-99 | 10.098 |
| SoxS | 356-373 | 9.959 |
| AraC | 164-181 | 9.784 |
| MetJ | 69-76 | 9.682 |
| MetR | 352-375 | 9.679 |
| MarA | 231-251 | 9.679 |
| PhoP | 248-264 | 9.598 |
| OmpR | 252-271 | 9.582 |
| UlaR | 336-355 | 9.494 |
| NarP | 362-368 | 9.477 |
| Lrp | 189-200 | 9.415 |
| TyrR | 152-173 | 9.119 |
| DnaA | 162-170 | 9.041 |
| CRP | 177-198 | 8.862 |
| ArgR | 148-163 | 8.740 |
| UxuR | 161-178 | 8.601 |
| RcsB | 181-194 | 8.575 |
| GntR | 24-43 | 8.142 |
| TrpR | 111-128 | 8.123 |
| FhlA | 319-358 | 8.113 |
| XylR | 249-266 | 7.958 |
| NarL | 342-348 | 7.438 |
| CpxR | 127-141 | 7.371 |
| PurR | 284-299 | 7.204 |
| DcuR | 112-166 | 7.102 |
| Mlc | 176-198 | 7.073 |
| CueR | 134-152 | 6.960 |
| NorR | 61-77 | 6.535 |
| Rob | 186-206 | 6.212 |
| FruR | 250-267 | 5.851 |
| TorR | 195-204 | 5.833 |
| FadR | 251-267 | 5.809 |
| GlpR | 29-48 | 5.741 |