| TF name | Position | PWM scan score |
| ArcA | 298-358 | 35.118 |
| GcvA | 258-286 | 26.007 |
| NagC | 193-215 | 25.624 |
| GadE | 194-213 | 23.762 |
| FNR | 189-210 | 22.858 |
| CysB | 237-278 | 22.479 |
| OmpR | 191-210 | 22.021 |
| DcuR | 334-388 | 19.965 |
| OxyR | 170-214 | 19.628 |
| Mlc | 186-208 | 18.443 |
| Nac | 191-205 | 18.218 |
| CRP | 186-207 | 17.981 |
| AgaR | 182-205 | 17.619 |
| CytR | 357-396 | 17.541 |
| PhoB | 340-359 | 16.701 |
| Ada | 172-199 | 16.683 |
| UlaR | 367-386 | 16.169 |
| RcsB | 320-333 | 16.125 |
| PhoP | 200-216 | 15.908 |
| MarA | 342-362 | 15.388 |
| Fis | 196-216 | 15.312 |
| H-NS | 193-207 | 14.622 |
| ArgR | 128-143 | 14.220 |
| GntR | 190-209 | 14.060 |
| CpxR | 263-277 | 13.326 |
| ModE | 311-337 | 12.863 |
| IHF | 374-386 | 12.692 |
| PspF | 228-244 | 12.659 |
| DeoR | 50-65 | 12.506 |
| AraC | 286-303 | 12.284 |
| XylR | 188-205 | 12.259 |
| Lrp | 192-203 | 11.866 |
| TyrR | 188-209 | 11.675 |
| SoxS | 120-137 | 11.122 |
| FadR | 133-149 | 10.855 |
| Fur | 314-328 | 10.834 |
| ArgP | 194-206 | 10.665 |
| NorR | 316-332 | 10.487 |
| IdnR | 231-246 | 10.120 |
| LacI | 240-260 | 9.333 |
| TorR | 192-201 | 9.263 |
| NarL | 252-258 | 9.240 |
| MetR | 271-294 | 8.687 |
| GlpR | 246-265 | 8.682 |
| Rob | 198-218 | 8.583 |
| DnaA | 68-76 | 8.492 |
| PurR | 235-250 | 8.392 |
| FhlA | 237-276 | 8.297 |
| FruR | 361-378 | 7.833 |
| NtrC | 248-264 | 7.713 |
| NarP | 123-129 | 7.550 |
| UxuR | 6-23 | 6.724 |
| MalT | 311-320 | 6.389 |
| GalR | 316-331 | 5.796 |
| GalS | 316-331 | 5.796 |