| TF name | Position | PWM scan score |
| ArcA | 297-357 | 43.569 |
| CysB | 114-155 | 35.078 |
| NagC | 321-343 | 26.886 |
| OxyR | 66-110 | 25.163 |
| CytR | 315-354 | 21.722 |
| OmpR | 321-340 | 21.041 |
| Mlc | 319-341 | 20.423 |
| PhoB | 338-357 | 19.759 |
| Rob | 343-363 | 19.506 |
| GcvA | 62-90 | 17.780 |
| GadE | 297-316 | 17.726 |
| Ada | 277-304 | 17.351 |
| FNR | 293-314 | 16.954 |
| MarA | 340-360 | 16.774 |
| RcsB | 318-331 | 16.125 |
| CpxR | 295-309 | 16.054 |
| Fur | 380-394 | 16.037 |
| CRP | 290-311 | 15.776 |
| AgaR | 307-330 | 15.684 |
| UlaR | 269-288 | 15.498 |
| Fis | 283-303 | 15.227 |
| IHF | 234-246 | 15.091 |
| PhoP | 325-341 | 15.057 |
| H-NS | 262-276 | 14.540 |
| ArgR | 29-44 | 14.474 |
| FruR | 353-370 | 14.430 |
| DcuR | 303-357 | 14.019 |
| GlpR | 70-89 | 13.959 |
| ModE | 309-335 | 13.790 |
| AraC | 266-283 | 13.165 |
| IdnR | 305-320 | 12.628 |
| Nac | 239-253 | 12.467 |
| TyrR | 330-351 | 12.034 |
| GntR | 238-257 | 12.012 |
| Lrp | 323-334 | 11.522 |
| MetR | 375-398 | 11.245 |
| DnaA | 91-99 | 10.950 |
| SoxS | 265-282 | 10.266 |
| MetJ | 93-100 | 10.014 |
| ArgP | 145-157 | 9.805 |
| MelR | 263-280 | 9.738 |
| XylR | 370-387 | 9.613 |
| DeoR | 275-290 | 9.520 |
| NorR | 267-283 | 9.154 |
| FhlA | 317-356 | 9.102 |
| NarL | 248-254 | 8.993 |
| PspF | 306-322 | 8.936 |
| UxuR | 349-366 | 8.487 |
| TorR | 301-310 | 8.090 |
| FadR | 10-26 | 7.465 |
| RhaS | 90-106 | 6.933 |
| NarP | 71-77 | 6.860 |
| GalR | 314-329 | 6.679 |
| GalS | 314-329 | 6.679 |
| NtrC | 27-43 | 5.558 |
| MalT | 121-130 | 5.059 |