| TF name | Position | PWM scan score |
| ArcA | 318-378 | 28.457 |
| TyrR | 329-350 | 19.197 |
| GalR | 184-199 | 18.349 |
| GalS | 184-199 | 18.349 |
| PhoB | 108-127 | 17.819 |
| UlaR | 309-328 | 16.875 |
| Ada | 258-285 | 15.863 |
| DeoR | 351-366 | 15.724 |
| OxyR | 321-365 | 15.489 |
| CytR | 332-371 | 14.859 |
| RhaS | 339-355 | 14.537 |
| AraC | 339-356 | 13.526 |
| FNR | 93-114 | 13.447 |
| OmpR | 11-30 | 13.331 |
| CRP | 347-368 | 13.137 |
| GcvA | 311-339 | 13.129 |
| NorR | 287-303 | 12.978 |
| SoxS | 325-342 | 12.609 |
| CysB | 313-354 | 11.988 |
| H-NS | 318-332 | 11.836 |
| AgaR | 320-343 | 11.816 |
| PhoP | 118-134 | 11.808 |
| XylR | 202-219 | 11.773 |
| Mlc | 347-369 | 11.585 |
| GntR | 316-335 | 11.580 |
| UxuR | 240-257 | 11.099 |
| Fis | 339-359 | 11.039 |
| GlpR | 347-366 | 10.919 |
| MarA | 183-203 | 10.785 |
| RcsB | 10-23 | 10.743 |
| PurR | 184-199 | 10.629 |
| Fur | 383-397 | 10.538 |
| Nac | 375-389 | 10.529 |
| Rob | 125-145 | 10.335 |
| Lrp | 95-106 | 10.225 |
| MetR | 259-282 | 10.020 |
| IHF | 312-324 | 10.014 |
| DcuR | 127-181 | 9.452 |
| ArgR | 331-346 | 9.330 |
| NarL | 384-390 | 9.129 |
| NagC | 306-328 | 9.049 |
| IdnR | 182-197 | 8.975 |
| ArgP | 211-223 | 8.607 |
| MelR | 196-213 | 8.320 |
| CpxR | 142-156 | 8.052 |
| MetJ | 335-342 | 7.925 |
| DnaA | 292-300 | 7.558 |
| ModE | 324-350 | 7.552 |
| PspF | 164-180 | 7.398 |
| FadR | 296-312 | 7.238 |
| TorR | 293-302 | 7.068 |
| GadE | 179-198 | 6.716 |
| FhlA | 93-132 | 6.640 |
| NtrC | 137-153 | 5.573 |
| LexA | 340-359 | 5.064 |