| TF name | Position | PWM scan score |
| CytR | 349-388 | 26.347 |
| ArcA | 332-392 | 21.814 |
| Fur | 321-335 | 18.866 |
| OmpR | 361-380 | 16.675 |
| CysB | 319-360 | 16.222 |
| OxyR | 323-367 | 15.709 |
| RcsB | 359-372 | 15.484 |
| Fis | 200-220 | 13.945 |
| H-NS | 199-213 | 13.848 |
| PhoB | 197-216 | 13.520 |
| ArgP | 205-217 | 13.088 |
| DeoR | 202-217 | 13.060 |
| FNR | 200-221 | 12.841 |
| CpxR | 202-216 | 12.698 |
| GcvA | 131-159 | 12.518 |
| IHF | 367-379 | 12.428 |
| AgaR | 330-353 | 12.420 |
| Rob | 60-80 | 12.185 |
| UlaR | 348-367 | 12.085 |
| CRP | 355-376 | 11.922 |
| AraC | 237-254 | 11.905 |
| NagC | 286-308 | 11.712 |
| Nac | 349-363 | 11.445 |
| PhoP | 311-327 | 11.382 |
| IdnR | 343-358 | 11.265 |
| Lrp | 350-361 | 11.013 |
| LexA | 348-367 | 10.899 |
| ArgR | 197-212 | 10.855 |
| MarA | 305-325 | 10.740 |
| MetR | 317-340 | 10.637 |
| TorR | 272-281 | 10.608 |
| GadE | 317-336 | 10.431 |
| CueR | 53-71 | 10.153 |
| Mlc | 354-376 | 9.832 |
| XylR | 57-74 | 9.781 |
| FadR | 232-248 | 9.730 |
| SoxS | 77-94 | 9.675 |
| NarL | 374-380 | 9.444 |
| GlpR | 366-385 | 9.065 |
| LacI | 208-228 | 8.359 |
| TyrR | 365-386 | 8.140 |
| Ada | 346-373 | 7.658 |
| PspF | 221-237 | 7.210 |
| MalT | 168-177 | 7.191 |
| UxuR | 261-278 | 7.164 |
| MelR | 265-282 | 7.115 |
| ModE | 246-272 | 7.082 |
| GalS | 64-79 | 6.744 |
| GalR | 64-79 | 6.744 |
| DnaA | 267-275 | 6.457 |
| PurR | 131-146 | 6.425 |
| NorR | 62-78 | 6.421 |
| TrpR | 310-327 | 6.076 |
| RhaS | 279-295 | 5.766 |
| GntR | 206-225 | 5.683 |
| FhlA | 239-278 | 5.515 |
| DcuR | 318-372 | 5.481 |
| FruR | 217-234 | 5.366 |
| NtrC | 195-211 | 5.266 |
| MetJ | 258-265 | 5.127 |