| TF name | Position | PWM scan score |
| ArcA | 333-393 | 25.034 |
| DcuR | 46-100 | 22.781 |
| OmpR | 326-345 | 18.742 |
| CytR | 318-357 | 18.610 |
| GadE | 173-192 | 18.000 |
| PhoB | 340-359 | 17.665 |
| CRP | 210-231 | 17.297 |
| RcsB | 217-230 | 16.817 |
| CysB | 344-385 | 16.194 |
| NagC | 329-351 | 15.784 |
| Mlc | 221-243 | 15.270 |
| FNR | 260-281 | 15.087 |
| GcvA | 344-372 | 15.034 |
| UlaR | 348-367 | 13.905 |
| H-NS | 338-352 | 13.833 |
| SoxS | 338-355 | 13.820 |
| OxyR | 345-389 | 13.491 |
| IHF | 345-357 | 13.268 |
| GlpR | 328-347 | 13.180 |
| Nac | 208-222 | 12.782 |
| Lrp | 342-353 | 12.641 |
| MelR | 316-333 | 12.181 |
| Fur | 213-227 | 12.173 |
| Fis | 260-280 | 12.136 |
| ArgP | 324-336 | 11.545 |
| PhoP | 56-72 | 11.244 |
| AgaR | 343-366 | 11.027 |
| ModE | 339-365 | 10.941 |
| UxuR | 341-358 | 10.179 |
| NarL | 261-267 | 10.130 |
| ArgR | 263-278 | 9.987 |
| MarA | 339-359 | 9.830 |
| CpxR | 57-71 | 9.378 |
| FruR | 196-213 | 9.306 |
| LexA | 261-280 | 9.199 |
| DeoR | 189-204 | 9.179 |
| NtrC | 291-307 | 9.045 |
| TyrR | 321-342 | 8.808 |
| MetR | 282-305 | 8.556 |
| GntR | 150-169 | 8.321 |
| Ada | 59-86 | 8.000 |
| PspF | 182-198 | 7.358 |
| Rob | 337-357 | 7.237 |
| NorR | 319-335 | 7.210 |
| MetJ | 240-247 | 7.171 |
| MalT | 93-102 | 7.130 |
| IdnR | 152-167 | 6.806 |
| XylR | 322-339 | 6.646 |
| AraC | 288-305 | 6.387 |
| RhaS | 363-379 | 6.253 |
| TorR | 55-64 | 5.171 |
| GalR | 17-32 | 5.039 |
| GalS | 17-32 | 5.039 |
| CueR | 202-220 | 5.016 |