| TF name | Position | PWM scan score |
| ArcA | 219-279 | 35.943 |
| FNR | 372-393 | 21.219 |
| CysB | 232-273 | 19.378 |
| CRP | 210-231 | 19.172 |
| OmpR | 34-53 | 18.742 |
| CytR | 26-65 | 18.610 |
| PhoB | 48-67 | 17.665 |
| DcuR | 30-84 | 17.111 |
| PspF | 227-243 | 16.507 |
| Fur | 137-151 | 16.002 |
| Mlc | 368-390 | 16.000 |
| NagC | 37-59 | 15.784 |
| GcvA | 52-80 | 15.034 |
| Nac | 368-382 | 14.983 |
| MarA | 135-155 | 14.928 |
| OxyR | 237-281 | 14.647 |
| TorR | 249-258 | 14.347 |
| XylR | 177-194 | 14.288 |
| GadE | 140-159 | 14.213 |
| AgaR | 369-392 | 14.173 |
| PhoP | 236-252 | 13.946 |
| UlaR | 56-75 | 13.905 |
| H-NS | 46-60 | 13.833 |
| SoxS | 46-63 | 13.820 |
| ModE | 239-265 | 13.563 |
| IHF | 53-65 | 13.268 |
| GlpR | 36-55 | 13.180 |
| GntR | 123-142 | 13.101 |
| Lrp | 50-61 | 12.641 |
| RcsB | 56-69 | 12.581 |
| Fis | 264-284 | 12.185 |
| MelR | 24-41 | 12.181 |
| ArgR | 351-366 | 12.157 |
| ArgP | 32-44 | 11.545 |
| IdnR | 356-371 | 10.919 |
| TyrR | 306-327 | 10.764 |
| CpxR | 373-387 | 10.714 |
| DeoR | 214-229 | 10.437 |
| UxuR | 49-66 | 10.179 |
| AraC | 276-293 | 9.986 |
| NorR | 181-197 | 9.879 |
| NarP | 312-318 | 9.477 |
| Ada | 237-264 | 9.414 |
| NarL | 360-366 | 9.376 |
| LexA | 345-364 | 9.040 |
| MetR | 208-231 | 8.877 |
| Rob | 325-345 | 8.853 |
| DnaA | 258-266 | 8.160 |
| GalR | 298-313 | 7.315 |
| GalS | 298-313 | 7.315 |
| FruR | 44-61 | 7.245 |
| MetJ | 386-393 | 7.009 |
| RhaS | 120-136 | 6.504 |
| MalT | 188-197 | 5.558 |