| TF name | Position | PWM scan score |
| ArcA | 326-386 | 38.131 |
| CysB | 53-94 | 28.447 |
| OxyR | 338-382 | 25.545 |
| OmpR | 45-64 | 21.619 |
| CytR | 353-392 | 21.593 |
| NagC | 351-373 | 20.904 |
| FNR | 351-372 | 20.294 |
| DcuR | 305-359 | 19.861 |
| SoxS | 346-363 | 18.487 |
| ModE | 184-210 | 18.297 |
| H-NS | 68-82 | 17.815 |
| Mlc | 117-139 | 17.576 |
| PspF | 339-355 | 17.491 |
| CRP | 254-275 | 16.282 |
| PhoB | 104-123 | 15.844 |
| AgaR | 103-126 | 15.786 |
| IHF | 360-372 | 15.472 |
| TyrR | 315-336 | 15.220 |
| Fur | 342-356 | 15.182 |
| UlaR | 242-261 | 14.994 |
| GcvA | 342-370 | 14.412 |
| Ada | 229-256 | 13.990 |
| GlpR | 87-106 | 13.256 |
| GadE | 263-282 | 13.155 |
| RcsB | 109-122 | 13.136 |
| PhoP | 305-321 | 13.078 |
| Rob | 319-339 | 12.972 |
| Fis | 378-398 | 12.905 |
| NorR | 326-342 | 12.817 |
| ArgP | 334-346 | 12.798 |
| GntR | 176-195 | 12.714 |
| ArgR | 381-396 | 12.235 |
| Lrp | 354-365 | 11.808 |
| MarA | 344-364 | 11.791 |
| MetR | 50-73 | 11.737 |
| CpxR | 319-333 | 11.439 |
| Nac | 261-275 | 11.308 |
| DeoR | 319-334 | 11.194 |
| XylR | 307-324 | 10.936 |
| DnaA | 293-301 | 9.821 |
| NarL | 126-132 | 9.729 |
| TorR | 262-271 | 9.392 |
| IdnR | 73-88 | 9.284 |
| MelR | 357-374 | 8.809 |
| GalS | 347-362 | 8.659 |
| GalR | 347-362 | 8.659 |
| TrpR | 163-180 | 8.546 |
| LexA | 379-398 | 8.411 |
| UxuR | 70-87 | 8.037 |
| NarP | 15-21 | 7.828 |
| AraC | 344-361 | 7.453 |
| FhlA | 318-357 | 7.408 |
| PurR | 273-288 | 7.365 |
| LacI | 47-67 | 7.174 |
| MetJ | 208-215 | 7.009 |
| RhaS | 95-111 | 6.340 |
| FruR | 75-92 | 5.348 |
| MalT | 31-40 | 5.281 |