| TF name | Position | PWM scan score |
| ArcA | 322-382 | 21.367 |
| CysB | 335-376 | 18.060 |
| PspF | 292-308 | 17.652 |
| NagC | 286-308 | 16.886 |
| OxyR | 269-313 | 15.211 |
| CytR | 339-378 | 15.172 |
| FNR | 329-350 | 14.908 |
| GadE | 368-387 | 14.006 |
| Fis | 289-309 | 13.642 |
| IdnR | 289-304 | 13.417 |
| GcvA | 310-338 | 13.118 |
| FhlA | 115-154 | 13.058 |
| UlaR | 101-120 | 13.034 |
| Ada | 192-219 | 12.781 |
| RcsB | 326-339 | 12.603 |
| DcuR | 130-184 | 12.440 |
| SoxS | 290-307 | 12.400 |
| MetR | 129-152 | 12.325 |
| H-NS | 295-309 | 11.670 |
| AgaR | 326-349 | 11.619 |
| LexA | 21-40 | 11.610 |
| Lrp | 340-351 | 11.577 |
| IHF | 338-350 | 11.335 |
| CRP | 331-352 | 11.227 |
| Nac | 330-344 | 10.956 |
| TorR | 337-346 | 10.903 |
| UxuR | 140-157 | 10.629 |
| OmpR | 365-384 | 10.580 |
| Rob | 346-366 | 10.134 |
| Fur | 70-84 | 10.008 |
| TyrR | 261-282 | 9.672 |
| Mlc | 354-376 | 9.618 |
| PhoP | 290-306 | 9.390 |
| CpxR | 357-371 | 9.388 |
| AraC | 144-161 | 9.027 |
| PhoB | 354-373 | 9.022 |
| MelR | 304-321 | 9.014 |
| ArgR | 68-83 | 8.978 |
| MarA | 322-342 | 8.831 |
| NarL | 367-373 | 8.792 |
| XylR | 327-344 | 8.768 |
| ModE | 317-343 | 8.572 |
| DeoR | 357-372 | 8.557 |
| NorR | 13-29 | 8.546 |
| DnaA | 336-344 | 7.974 |
| NarP | 176-182 | 7.828 |
| GlpR | 17-36 | 7.752 |
| ArgP | 364-376 | 7.638 |
| RhaS | 317-333 | 7.110 |
| GntR | 287-306 | 6.779 |
| FruR | 293-310 | 6.378 |
| MalT | 218-227 | 6.151 |
| CueR | 167-185 | 6.040 |