| TF name | Position | PWM scan score |
| ArcA | 267-327 | 32.909 |
| CytR | 272-311 | 23.217 |
| CysB | 267-308 | 22.527 |
| Mlc | 286-308 | 20.160 |
| FNR | 70-91 | 19.994 |
| OmpR | 134-153 | 19.932 |
| Ada | 120-147 | 19.073 |
| H-NS | 372-386 | 17.527 |
| MelR | 381-398 | 16.932 |
| DcuR | 100-154 | 16.809 |
| NagC | 141-163 | 16.413 |
| PhoB | 81-100 | 15.741 |
| IHF | 151-163 | 15.411 |
| OxyR | 340-384 | 14.950 |
| GadE | 50-69 | 14.798 |
| AgaR | 259-282 | 14.630 |
| UlaR | 250-269 | 14.281 |
| CRP | 278-299 | 14.246 |
| PhoP | 350-366 | 14.182 |
| GlpR | 365-384 | 14.023 |
| Nac | 294-308 | 13.881 |
| Rob | 109-129 | 13.655 |
| MarA | 328-348 | 13.605 |
| AraC | 255-272 | 13.279 |
| Fis | 366-386 | 12.956 |
| ArgP | 42-54 | 12.798 |
| MetR | 245-268 | 12.765 |
| GcvA | 366-394 | 12.742 |
| ModE | 246-272 | 12.429 |
| Lrp | 193-204 | 11.927 |
| XylR | 187-204 | 11.834 |
| TyrR | 130-151 | 11.302 |
| DeoR | 369-384 | 10.771 |
| SoxS | 248-265 | 10.485 |
| NorR | 229-245 | 10.309 |
| ArgR | 249-264 | 10.246 |
| NarL | 375-381 | 10.241 |
| GntR | 39-58 | 10.103 |
| Fur | 284-298 | 9.726 |
| CpxR | 290-304 | 9.725 |
| PurR | 132-147 | 9.633 |
| TorR | 69-78 | 9.392 |
| GalR | 43-58 | 8.132 |
| GalS | 43-58 | 8.132 |
| FruR | 76-93 | 7.952 |
| RcsB | 191-204 | 7.665 |
| MetJ | 127-134 | 7.597 |
| UxuR | 106-123 | 7.429 |
| CueR | 244-262 | 7.034 |
| DnaA | 150-158 | 6.645 |
| IdnR | 227-242 | 6.457 |
| NtrC | 97-113 | 6.226 |
| PspF | 221-237 | 6.223 |
| RhaS | 328-344 | 5.865 |
| TrpR | 45-62 | 5.807 |
| NarP | 277-283 | 5.774 |
| MalT | 118-127 | 5.501 |