| TF name | Position | PWM scan score |
| ArcA | 23-83 | 30.943 |
| CysB | 307-348 | 24.523 |
| OmpR | 48-67 | 19.233 |
| H-NS | 49-63 | 19.039 |
| Mlc | 29-51 | 18.403 |
| FNR | 315-336 | 18.375 |
| GcvA | 44-72 | 18.284 |
| GlpR | 314-333 | 16.811 |
| PhoB | 335-354 | 16.101 |
| ModE | 197-223 | 15.486 |
| CytR | 45-84 | 15.347 |
| PhoP | 13-29 | 15.129 |
| Ada | 33-60 | 14.947 |
| DcuR | 253-307 | 14.925 |
| GadE | 49-68 | 14.835 |
| OxyR | 39-83 | 14.709 |
| AgaR | 241-264 | 14.136 |
| MetR | 251-274 | 13.971 |
| ArgR | 342-357 | 13.922 |
| DeoR | 54-69 | 13.893 |
| SoxS | 59-76 | 13.453 |
| NagC | 247-269 | 13.338 |
| TyrR | 194-215 | 13.158 |
| Fur | 59-73 | 13.123 |
| UlaR | 224-243 | 13.003 |
| IHF | 239-251 | 12.849 |
| Fis | 356-376 | 12.796 |
| GalR | 3-18 | 12.690 |
| GalS | 3-18 | 12.690 |
| CRP | 139-160 | 12.542 |
| Nac | 130-144 | 12.489 |
| ArgP | 137-149 | 12.457 |
| MelR | 345-362 | 12.373 |
| MarA | 82-102 | 12.194 |
| Lrp | 200-211 | 11.822 |
| RcsB | 138-151 | 11.473 |
| XylR | 238-255 | 11.454 |
| CpxR | 258-272 | 11.407 |
| GntR | 201-220 | 10.496 |
| TorR | 265-274 | 10.203 |
| AraC | 359-376 | 10.199 |
| Rob | 200-220 | 10.177 |
| IdnR | 358-373 | 9.697 |
| NarP | 270-276 | 9.543 |
| LacI | 143-163 | 9.346 |
| PurR | 296-311 | 9.164 |
| NarL | 382-388 | 8.928 |
| DnaA | 238-246 | 8.304 |
| FruR | 372-389 | 7.604 |
| PspF | 232-248 | 7.576 |
| UxuR | 8-25 | 7.345 |
| NorR | 238-254 | 7.257 |
| FadR | 127-143 | 6.545 |
| NtrC | 92-108 | 5.090 |