| TF name | Position | PWM scan score |
| ArcA | 293-353 | 28.662 |
| PspF | 327-343 | 16.225 |
| OxyR | 212-256 | 15.536 |
| TorR | 140-149 | 15.284 |
| FNR | 314-335 | 15.253 |
| CysB | 296-337 | 15.122 |
| OmpR | 365-384 | 14.912 |
| RcsB | 9-22 | 14.690 |
| PhoB | 356-375 | 14.413 |
| MarA | 350-370 | 14.295 |
| NagC | 229-251 | 13.995 |
| CRP | 328-349 | 13.723 |
| Mlc | 99-121 | 13.634 |
| Fis | 90-110 | 13.427 |
| XylR | 222-239 | 13.171 |
| PhoP | 314-330 | 12.725 |
| TyrR | 330-351 | 12.705 |
| CytR | 86-125 | 12.686 |
| Fur | 376-390 | 12.241 |
| GcvA | 362-390 | 12.215 |
| DcuR | 281-335 | 12.085 |
| AgaR | 329-352 | 12.004 |
| RhaS | 264-280 | 11.854 |
| IHF | 45-57 | 11.545 |
| H-NS | 356-370 | 11.488 |
| SoxS | 344-361 | 11.314 |
| ArgP | 312-324 | 10.977 |
| FadR | 268-284 | 10.834 |
| Nac | 1-15 | 10.797 |
| AraC | 141-158 | 10.759 |
| Lrp | 143-154 | 10.651 |
| Rob | 314-334 | 10.532 |
| DeoR | 233-248 | 10.505 |
| DnaA | 102-110 | 10.501 |
| NarL | 332-338 | 10.130 |
| UlaR | 326-345 | 9.998 |
| LexA | 176-195 | 9.848 |
| ArgR | 361-376 | 8.842 |
| NorR | 272-288 | 8.798 |
| GntR | 84-103 | 8.746 |
| NarP | 255-261 | 8.496 |
| CpxR | 81-95 | 7.865 |
| GadE | 289-308 | 7.651 |
| CueR | 340-358 | 7.239 |
| NtrC | 225-241 | 7.224 |
| PurR | 82-97 | 6.713 |
| GlpR | 348-367 | 6.640 |
| MetJ | 158-165 | 6.576 |
| LacI | 185-205 | 6.482 |
| Ada | 213-240 | 6.382 |
| MalT | 89-98 | 6.250 |
| MetR | 129-152 | 6.090 |
| TrpR | 39-56 | 5.463 |
| IdnR | 366-381 | 5.191 |
| UxuR | 165-182 | 5.005 |