| TF name | Position | PWM scan score |
| ArcA | 146-206 | 32.726 |
| CysB | 238-279 | 26.542 |
| GadE | 189-208 | 21.807 |
| CytR | 225-264 | 20.564 |
| Mlc | 185-207 | 19.565 |
| DcuR | 191-245 | 17.551 |
| NagC | 186-208 | 17.464 |
| AgaR | 227-250 | 16.245 |
| TorR | 387-396 | 15.284 |
| TyrR | 41-62 | 14.738 |
| RcsB | 256-269 | 14.690 |
| PhoB | 227-246 | 13.985 |
| H-NS | 192-206 | 13.970 |
| Nac | 233-247 | 13.884 |
| OmpR | 181-200 | 13.810 |
| Rob | 83-103 | 13.724 |
| GlpR | 219-238 | 13.464 |
| Fis | 337-357 | 13.427 |
| GcvA | 175-203 | 13.054 |
| FNR | 237-258 | 12.793 |
| DeoR | 39-54 | 12.552 |
| IHF | 240-252 | 12.334 |
| ArgP | 200-212 | 12.254 |
| XylR | 218-235 | 12.233 |
| SoxS | 78-95 | 12.138 |
| Lrp | 240-251 | 11.808 |
| PhoP | 195-211 | 11.763 |
| OxyR | 229-273 | 11.717 |
| GntR | 232-251 | 11.641 |
| MetR | 113-136 | 11.467 |
| CRP | 39-60 | 11.019 |
| Ada | 243-270 | 10.911 |
| FadR | 197-213 | 10.820 |
| ModE | 188-214 | 10.726 |
| AraC | 119-136 | 10.510 |
| DnaA | 349-357 | 10.501 |
| MarA | 228-248 | 10.415 |
| PurR | 221-236 | 9.968 |
| ArgR | 233-248 | 9.798 |
| MetJ | 153-160 | 9.682 |
| PspF | 237-253 | 9.604 |
| NarL | 239-245 | 9.580 |
| FruR | 69-86 | 9.037 |
| GalR | 221-236 | 9.005 |
| GalS | 221-236 | 9.005 |
| LexA | 221-240 | 8.951 |
| NarP | 130-136 | 8.911 |
| Fur | 256-270 | 8.527 |
| IdnR | 54-69 | 8.035 |
| RhaS | 109-125 | 8.026 |
| UlaR | 236-255 | 7.870 |
| CpxR | 328-342 | 7.865 |
| NorR | 242-258 | 6.535 |
| MalT | 336-345 | 6.250 |
| UxuR | 9-26 | 5.549 |
| TrpR | 286-303 | 5.463 |
| NtrC | 223-239 | 5.015 |