| TF name | Position | PWM scan score |
| ArcA | 178-238 | 31.166 |
| CysB | 287-328 | 22.446 |
| CytR | 319-358 | 20.721 |
| NagC | 200-222 | 20.428 |
| DcuR | 135-189 | 19.481 |
| OmpR | 108-127 | 19.087 |
| Mlc | 198-220 | 18.893 |
| GadE | 299-318 | 18.504 |
| OxyR | 327-371 | 17.887 |
| GcvA | 285-313 | 17.141 |
| ArgR | 213-228 | 16.483 |
| PhoP | 215-231 | 16.237 |
| MetR | 183-206 | 15.974 |
| FNR | 336-357 | 15.873 |
| IHF | 191-203 | 15.438 |
| AgaR | 342-365 | 15.419 |
| UxuR | 342-359 | 14.658 |
| CRP | 246-267 | 14.621 |
| H-NS | 220-234 | 14.547 |
| XylR | 348-365 | 14.520 |
| AraC | 116-133 | 14.302 |
| TyrR | 224-245 | 13.737 |
| CpxR | 200-214 | 13.487 |
| Fis | 102-122 | 13.356 |
| Fur | 214-228 | 13.225 |
| Lrp | 297-308 | 12.925 |
| RcsB | 287-300 | 12.419 |
| MetJ | 359-366 | 11.820 |
| MelR | 11-28 | 11.684 |
| TorR | 349-358 | 11.606 |
| ModE | 188-214 | 11.443 |
| Rob | 205-225 | 11.437 |
| ArgP | 299-311 | 11.371 |
| SoxS | 205-222 | 10.540 |
| PhoB | 353-372 | 10.366 |
| PspF | 349-365 | 10.148 |
| NarL | 174-180 | 9.994 |
| DeoR | 208-223 | 9.968 |
| DnaA | 276-284 | 9.795 |
| UlaR | 352-371 | 9.795 |
| Nac | 331-345 | 9.740 |
| NorR | 117-133 | 9.604 |
| FruR | 279-296 | 9.487 |
| GntR | 17-36 | 8.713 |
| GlpR | 377-396 | 8.364 |
| IdnR | 347-362 | 8.250 |
| PurR | 327-342 | 8.082 |
| MarA | 102-122 | 7.874 |
| NtrC | 258-274 | 7.826 |
| FadR | 48-64 | 7.167 |
| NarP | 97-103 | 7.056 |
| LexA | 183-202 | 6.164 |
| Ada | 261-288 | 6.140 |
| FhlA | 202-241 | 5.839 |
| LacI | 317-337 | 5.562 |
| MalT | 234-243 | 5.158 |