| TF name | Position | PWM scan score |
| CysB | 349-390 | 31.691 |
| GcvA | 370-398 | 30.164 |
| ArcA | 202-262 | 24.813 |
| CytR | 286-325 | 21.421 |
| NagC | 77-99 | 20.233 |
| XylR | 234-251 | 20.222 |
| OmpR | 374-393 | 18.530 |
| UxuR | 362-379 | 18.227 |
| AgaR | 276-299 | 17.618 |
| Ada | 178-205 | 15.209 |
| OxyR | 347-391 | 15.105 |
| ArgR | 237-252 | 15.055 |
| FNR | 245-266 | 15.042 |
| ArgP | 91-103 | 14.298 |
| H-NS | 118-132 | 13.977 |
| IHF | 191-203 | 13.800 |
| ModE | 284-310 | 13.786 |
| FhlA | 203-242 | 13.358 |
| Fis | 119-139 | 13.157 |
| GadE | 115-134 | 12.991 |
| PhoB | 250-269 | 12.718 |
| Rob | 295-315 | 12.705 |
| TyrR | 338-359 | 12.672 |
| CRP | 242-263 | 12.432 |
| Lrp | 291-302 | 12.422 |
| TorR | 190-199 | 12.150 |
| UlaR | 368-387 | 12.036 |
| MelR | 179-196 | 12.011 |
| Mlc | 77-99 | 11.994 |
| PhoP | 302-318 | 11.821 |
| Fur | 370-384 | 11.794 |
| MetR | 363-386 | 11.647 |
| RcsB | 289-302 | 11.625 |
| SoxS | 302-319 | 11.595 |
| FruR | 304-321 | 11.577 |
| DeoR | 221-236 | 11.249 |
| Nac | 171-185 | 11.028 |
| CpxR | 168-182 | 10.656 |
| AraC | 191-208 | 10.635 |
| DnaA | 67-75 | 10.550 |
| DcuR | 235-289 | 10.110 |
| MarA | 291-311 | 10.058 |
| GlpR | 112-131 | 9.922 |
| NarL | 4-10 | 9.729 |
| LexA | 313-332 | 9.375 |
| PspF | 249-265 | 8.936 |
| GntR | 371-390 | 8.835 |
| IdnR | 366-381 | 8.767 |
| NtrC | 212-228 | 8.683 |
| NorR | 375-391 | 8.523 |
| GalS | 303-318 | 7.547 |
| GalR | 303-318 | 7.547 |
| LacI | 344-364 | 7.093 |
| TrpR | 239-256 | 6.676 |
| FadR | 226-242 | 6.617 |
| PurR | 340-355 | 6.570 |
| RhaS | 354-370 | 5.070 |