| TF name | Position | PWM scan score |
| ArcA | 236-296 | 31.119 |
| CaiF | 238-282 | 22.152 |
| OxyR | 274-318 | 21.664 |
| Fis | 245-265 | 19.728 |
| Mlc | 157-179 | 19.144 |
| H-NS | 272-286 | 17.451 |
| DcuR | 280-334 | 17.403 |
| CytR | 141-180 | 17.000 |
| Fur | 80-94 | 16.563 |
| CysB | 294-335 | 15.999 |
| ModE | 193-219 | 15.759 |
| Rob | 83-103 | 15.689 |
| OmpR | 309-328 | 15.611 |
| GadE | 273-292 | 15.057 |
| MarA | 143-163 | 14.960 |
| PhoB | 141-160 | 14.501 |
| TyrR | 281-302 | 14.052 |
| RcsB | 239-252 | 13.173 |
| IHF | 283-295 | 12.716 |
| MelR | 243-260 | 12.701 |
| CRP | 357-378 | 12.597 |
| SoxS | 315-332 | 12.428 |
| NagC | 311-333 | 12.427 |
| PhoP | 268-284 | 12.279 |
| FNR | 274-295 | 12.221 |
| ArgR | 78-93 | 11.801 |
| NtrC | 372-388 | 11.574 |
| AraC | 233-250 | 11.535 |
| Lrp | 238-249 | 11.438 |
| GalS | 81-96 | 11.212 |
| GalR | 81-96 | 11.212 |
| TorR | 158-167 | 10.903 |
| GntR | 288-307 | 10.794 |
| NorR | 79-95 | 10.779 |
| Nac | 237-251 | 10.741 |
| FruR | 279-296 | 10.542 |
| FadR | 200-216 | 10.325 |
| DnaA | 91-99 | 10.111 |
| MetR | 346-369 | 9.971 |
| UxuR | 86-103 | 9.853 |
| GcvA | 267-295 | 9.842 |
| ArgP | 234-246 | 9.406 |
| NarL | 331-337 | 9.129 |
| DeoR | 128-143 | 9.115 |
| UlaR | 208-227 | 9.029 |
| LexA | 249-268 | 8.838 |
| XylR | 267-284 | 8.693 |
| PspF | 317-333 | 8.221 |
| Ada | 327-354 | 8.014 |
| LacI | 341-361 | 7.983 |
| NarP | 205-211 | 7.806 |
| CpxR | 317-331 | 7.448 |
| AgaR | 317-340 | 7.068 |
| IdnR | 234-249 | 6.991 |
| PurR | 285-300 | 6.720 |
| MalT | 5-14 | 6.708 |
| GlpR | 273-292 | 6.612 |
| MetJ | 161-168 | 6.153 |
| RhaS | 256-272 | 5.873 |