| TF name | Position | PWM scan score |
| ArcA | 279-339 | 33.295 |
| NagC | 278-300 | 21.502 |
| CysB | 266-307 | 19.860 |
| CytR | 180-219 | 18.753 |
| AgaR | 29-52 | 18.341 |
| PhoB | 289-308 | 17.723 |
| FNR | 352-373 | 17.679 |
| DcuR | 339-393 | 17.417 |
| PhoP | 300-316 | 16.452 |
| OxyR | 35-79 | 16.287 |
| UlaR | 172-191 | 14.884 |
| OmpR | 293-312 | 14.639 |
| TyrR | 297-318 | 14.281 |
| H-NS | 144-158 | 14.202 |
| CRP | 22-43 | 14.015 |
| Mlc | 298-320 | 13.620 |
| MetR | 167-190 | 13.595 |
| IdnR | 324-339 | 13.417 |
| CpxR | 380-394 | 13.252 |
| Nac | 295-309 | 12.913 |
| GalS | 53-68 | 12.858 |
| GalR | 53-68 | 12.858 |
| PspF | 132-148 | 12.508 |
| Fis | 288-308 | 12.482 |
| Rob | 147-167 | 12.427 |
| Lrp | 388-399 | 12.315 |
| GcvA | 288-316 | 12.264 |
| Fur | 40-54 | 11.752 |
| MarA | 316-336 | 11.707 |
| NorR | 33-49 | 11.662 |
| ModE | 369-395 | 11.261 |
| SoxS | 282-299 | 11.197 |
| IHF | 377-389 | 11.119 |
| DnaA | 360-368 | 10.817 |
| ArgP | 298-310 | 10.813 |
| GadE | 293-312 | 10.747 |
| GntR | 353-372 | 10.736 |
| ArgR | 301-316 | 10.590 |
| DeoR | 209-224 | 10.320 |
| RcsB | 175-188 | 10.291 |
| XylR | 269-286 | 9.877 |
| TorR | 298-307 | 9.826 |
| NarL | 48-54 | 9.580 |
| GlpR | 331-350 | 9.204 |
| AraC | 295-312 | 9.199 |
| LexA | 185-204 | 8.849 |
| NarP | 382-388 | 8.372 |
| MelR | 36-53 | 8.350 |
| FhlA | 354-393 | 7.934 |
| PurR | 63-78 | 7.864 |
| UxuR | 306-323 | 7.859 |
| FadR | 18-34 | 7.474 |
| MetJ | 303-310 | 7.082 |
| Ada | 163-190 | 6.516 |
| MalT | 285-294 | 6.024 |
| NtrC | 309-325 | 5.853 |
| FruR | 380-397 | 5.613 |
| LacI | 149-169 | 5.052 |