| TF name | Position | PWM scan score |
| ArcA | 164-224 | 29.943 |
| CysB | 260-301 | 25.431 |
| OxyR | 157-201 | 22.432 |
| CytR | 336-375 | 19.219 |
| AgaR | 117-140 | 18.551 |
| UxuR | 118-135 | 18.294 |
| Fur | 119-133 | 17.114 |
| Nac | 358-372 | 16.998 |
| NagC | 158-180 | 16.797 |
| TyrR | 147-168 | 16.593 |
| DcuR | 331-385 | 15.496 |
| FNR | 274-295 | 15.192 |
| Mlc | 359-381 | 15.116 |
| Fis | 359-379 | 14.789 |
| CRP | 164-185 | 14.780 |
| FhlA | 305-344 | 14.567 |
| RcsB | 168-181 | 14.351 |
| GadE | 273-292 | 14.213 |
| Rob | 122-142 | 14.144 |
| OmpR | 354-373 | 13.990 |
| GcvA | 352-380 | 13.465 |
| SoxS | 285-302 | 13.452 |
| ModE | 302-328 | 13.220 |
| GntR | 171-190 | 13.178 |
| PhoP | 173-189 | 12.889 |
| XylR | 11-28 | 12.884 |
| MetR | 2-25 | 12.742 |
| H-NS | 357-371 | 12.529 |
| IdnR | 142-157 | 12.121 |
| ArgP | 117-129 | 12.063 |
| AraC | 180-197 | 12.029 |
| CpxR | 124-138 | 11.783 |
| DeoR | 132-147 | 11.434 |
| Ada | 199-226 | 11.314 |
| Lrp | 170-181 | 11.221 |
| MarA | 283-303 | 11.187 |
| UlaR | 7-26 | 11.060 |
| IHF | 297-309 | 10.819 |
| ArgR | 294-309 | 10.587 |
| MelR | 367-384 | 10.560 |
| GlpR | 359-378 | 10.465 |
| TrpR | 379-396 | 10.439 |
| TorR | 179-188 | 9.826 |
| DnaA | 166-174 | 9.731 |
| NarL | 226-232 | 9.729 |
| FruR | 98-115 | 9.621 |
| NarP | 69-75 | 9.477 |
| PhoB | 161-180 | 9.359 |
| PspF | 9-25 | 8.936 |
| LexA | 151-170 | 8.350 |
| NorR | 166-182 | 7.096 |
| PurR | 198-213 | 6.442 |
| FadR | 319-335 | 6.180 |
| MetJ | 161-168 | 6.061 |
| MalT | 60-69 | 6.014 |