| TF name | Position | PWM scan score |
| ArcA | 194-254 | 25.838 |
| CRP | 232-253 | 20.814 |
| CysB | 40-81 | 20.192 |
| Mlc | 231-253 | 19.935 |
| CytR | 45-84 | 19.219 |
| UlaR | 166-185 | 17.674 |
| GadE | 234-253 | 17.196 |
| FNR | 230-251 | 17.107 |
| Nac | 67-81 | 16.998 |
| PhoP | 95-111 | 16.832 |
| Fis | 229-249 | 16.529 |
| OmpR | 377-396 | 16.414 |
| ModE | 279-305 | 16.139 |
| SoxS | 237-254 | 15.916 |
| DcuR | 40-94 | 15.496 |
| PhoB | 237-256 | 15.285 |
| FadR | 199-215 | 14.606 |
| OxyR | 175-219 | 14.578 |
| FhlA | 14-53 | 14.567 |
| AraC | 221-238 | 14.504 |
| XylR | 200-217 | 14.311 |
| AgaR | 55-78 | 14.097 |
| ArgP | 245-257 | 14.054 |
| GcvA | 61-89 | 13.465 |
| PurR | 330-345 | 13.279 |
| Ada | 212-239 | 13.181 |
| IHF | 386-398 | 13.144 |
| H-NS | 234-248 | 12.832 |
| MetR | 191-214 | 12.689 |
| CpxR | 209-223 | 12.676 |
| Lrp | 238-249 | 11.748 |
| ArgR | 243-258 | 11.699 |
| Fur | 229-243 | 11.618 |
| NagC | 69-91 | 11.052 |
| NorR | 203-219 | 10.940 |
| TorR | 385-394 | 10.903 |
| MarA | 99-119 | 10.899 |
| DeoR | 338-353 | 10.744 |
| FruR | 305-322 | 10.721 |
| TyrR | 207-228 | 10.674 |
| MelR | 76-93 | 10.560 |
| GlpR | 68-87 | 10.465 |
| TrpR | 88-105 | 10.439 |
| IdnR | 207-222 | 10.204 |
| DnaA | 384-392 | 9.795 |
| GntR | 227-246 | 9.251 |
| Rob | 63-83 | 9.246 |
| RcsB | 227-240 | 9.051 |
| PspF | 197-213 | 8.459 |
| UxuR | 144-161 | 8.396 |
| MetJ | 221-228 | 8.365 |
| NarL | 376-382 | 8.280 |
| LacI | 230-250 | 7.785 |
| NtrC | 255-271 | 7.222 |
| NarP | 64-70 | 6.464 |