| TF name | Position | PWM scan score |
| ArcA | 334-394 | 22.850 |
| GadE | 296-315 | 21.263 |
| MarA | 38-58 | 16.523 |
| NagC | 340-362 | 14.763 |
| Mlc | 217-239 | 14.473 |
| Fis | 301-321 | 13.679 |
| NtrC | 315-331 | 13.638 |
| ModE | 344-370 | 13.117 |
| GlpR | 39-58 | 13.019 |
| ArgP | 307-319 | 12.457 |
| PhoP | 350-366 | 12.367 |
| CpxR | 342-356 | 12.358 |
| PhoB | 218-237 | 12.343 |
| XylR | 84-101 | 12.337 |
| SoxS | 59-76 | 12.102 |
| H-NS | 308-322 | 12.063 |
| OmpR | 37-56 | 11.625 |
| DcuR | 341-395 | 11.423 |
| FNR | 227-248 | 11.392 |
| ArgR | 304-319 | 11.224 |
| IdnR | 210-225 | 11.097 |
| GcvA | 138-166 | 11.010 |
| CRP | 337-358 | 10.844 |
| Lrp | 337-348 | 10.789 |
| FruR | 140-157 | 10.267 |
| UlaR | 329-348 | 10.226 |
| IHF | 361-373 | 9.887 |
| FhlA | 88-127 | 9.766 |
| Rob | 306-326 | 9.645 |
| Ada | 316-343 | 9.407 |
| DnaA | 115-123 | 9.278 |
| RcsB | 335-348 | 9.250 |
| UxuR | 242-259 | 8.789 |
| GntR | 202-221 | 8.634 |
| NarP | 179-185 | 8.575 |
| CytR | 218-257 | 8.349 |
| Nac | 298-312 | 8.329 |
| DeoR | 74-89 | 8.260 |
| NorR | 220-236 | 8.093 |
| AgaR | 354-377 | 8.042 |
| MelR | 329-346 | 7.867 |
| NarL | 352-358 | 7.791 |
| LexA | 345-364 | 7.782 |
| FadR | 8-24 | 7.242 |
| CysB | 326-367 | 7.190 |
| TyrR | 215-236 | 7.103 |
| MetJ | 287-294 | 6.700 |
| MalT | 227-236 | 6.655 |
| Fur | 300-314 | 6.574 |
| PspF | 143-159 | 5.884 |
| OxyR | 295-339 | 5.630 |
| TorR | 32-41 | 5.472 |
| MetR | 207-230 | 5.427 |
| AraC | 209-226 | 5.398 |