| TF name | Position | PWM scan score |
| ArcA | 289-349 | 43.787 |
| CysB | 306-347 | 23.418 |
| Mlc | 163-185 | 23.417 |
| PhoP | 321-337 | 22.644 |
| CytR | 156-195 | 21.255 |
| AgaR | 211-234 | 20.515 |
| GadE | 166-185 | 19.722 |
| OmpR | 311-330 | 19.102 |
| FNR | 2-23 | 18.747 |
| OxyR | 152-196 | 18.724 |
| DcuR | 317-371 | 18.286 |
| H-NS | 169-183 | 17.702 |
| NagC | 299-321 | 17.673 |
| PhoB | 323-342 | 16.164 |
| ModE | 345-371 | 16.141 |
| CpxR | 12-26 | 15.364 |
| Nac | 301-315 | 14.984 |
| Fis | 316-336 | 14.905 |
| GcvA | 104-132 | 14.754 |
| SoxS | 368-385 | 14.427 |
| CRP | 211-232 | 14.371 |
| Rob | 2-22 | 14.073 |
| IHF | 330-342 | 13.911 |
| GlpR | 1-20 | 13.910 |
| Fur | 320-334 | 13.729 |
| RcsB | 339-352 | 13.603 |
| AraC | 374-391 | 13.515 |
| GntR | 251-270 | 13.500 |
| ArgR | 318-333 | 13.362 |
| UlaR | 226-245 | 13.295 |
| MarA | 143-163 | 13.042 |
| DeoR | 377-392 | 12.713 |
| IdnR | 246-261 | 12.628 |
| TyrR | 295-316 | 12.603 |
| PurR | 183-198 | 12.089 |
| Ada | 350-377 | 11.579 |
| XylR | 116-133 | 11.520 |
| Lrp | 5-16 | 11.106 |
| GalR | 183-198 | 11.065 |
| GalS | 183-198 | 11.065 |
| LexA | 56-75 | 10.582 |
| FhlA | 338-377 | 10.160 |
| TorR | 373-382 | 9.826 |
| MetR | 21-44 | 9.655 |
| PspF | 370-386 | 9.631 |
| RhaS | 24-40 | 9.593 |
| LacI | 30-50 | 9.188 |
| NarL | 375-381 | 9.129 |
| ArgP | 177-189 | 8.711 |
| UxuR | 331-348 | 8.121 |
| NarP | 238-244 | 7.828 |
| NorR | 230-246 | 7.710 |
| DnaA | 181-189 | 7.130 |
| MalT | 222-231 | 7.129 |
| FadR | 117-133 | 6.915 |
| TrpR | 250-267 | 6.864 |
| FruR | 215-232 | 6.556 |
| MetJ | 339-346 | 6.375 |
| MelR | 310-327 | 5.742 |