| TF name | Position | PWM scan score |
| ArcA | 226-286 | 19.759 |
| PhoP | 335-351 | 17.529 |
| CysB | 270-311 | 17.008 |
| MelR | 183-200 | 14.794 |
| UlaR | 159-178 | 14.366 |
| GlpR | 260-279 | 13.630 |
| NagC | 366-388 | 13.281 |
| GntR | 245-264 | 13.025 |
| IHF | 348-360 | 12.709 |
| GadE | 341-360 | 12.588 |
| XylR | 191-208 | 12.469 |
| MarA | 147-167 | 12.413 |
| FNR | 339-360 | 12.402 |
| Nac | 52-66 | 12.395 |
| Fur | 189-203 | 12.363 |
| ArgR | 377-392 | 11.883 |
| ArgP | 295-307 | 11.464 |
| AraC | 189-206 | 11.310 |
| RcsB | 51-64 | 10.713 |
| AgaR | 46-69 | 10.290 |
| SoxS | 153-170 | 10.276 |
| Lrp | 362-373 | 10.180 |
| CRP | 45-66 | 10.038 |
| OmpR | 336-355 | 10.023 |
| PhoB | 46-65 | 9.643 |
| OxyR | 149-193 | 9.440 |
| GcvA | 294-322 | 9.401 |
| Ada | 36-63 | 9.182 |
| ModE | 231-257 | 9.123 |
| FruR | 231-248 | 9.113 |
| TorR | 56-65 | 9.030 |
| DeoR | 251-266 | 9.017 |
| NarL | 65-71 | 8.685 |
| CytR | 359-398 | 8.559 |
| GalS | 148-163 | 8.528 |
| GalR | 148-163 | 8.528 |
| Fis | 290-310 | 8.525 |
| Rob | 291-311 | 8.423 |
| CpxR | 299-313 | 8.347 |
| DcuR | 43-97 | 8.176 |
| NorR | 161-177 | 8.160 |
| H-NS | 268-282 | 8.077 |
| MetJ | 189-196 | 8.010 |
| TyrR | 357-378 | 7.808 |
| IdnR | 232-247 | 7.696 |
| MetR | 251-274 | 7.395 |
| MalT | 12-21 | 7.280 |
| Mlc | 241-263 | 7.131 |
| DnaA | 68-76 | 6.809 |
| PspF | 266-282 | 6.599 |
| UxuR | 239-256 | 6.254 |
| FadR | 115-131 | 5.577 |