| TF name | Position | PWM scan score |
| CysB | 268-309 | 31.733 |
| ArcA | 313-373 | 30.538 |
| OxyR | 332-376 | 19.339 |
| GcvA | 368-396 | 18.832 |
| FNR | 355-376 | 18.625 |
| Mlc | 368-390 | 17.911 |
| ModE | 361-387 | 17.844 |
| RcsB | 331-344 | 17.647 |
| Fis | 375-395 | 17.350 |
| DcuR | 266-320 | 17.030 |
| NagC | 95-117 | 16.795 |
| TyrR | 368-389 | 16.598 |
| PhoP | 101-117 | 16.479 |
| OmpR | 280-299 | 16.163 |
| CRP | 352-373 | 15.753 |
| CytR | 245-284 | 15.536 |
| PhoB | 296-315 | 14.893 |
| Fur | 375-389 | 14.815 |
| MetR | 52-75 | 14.520 |
| XylR | 2-19 | 14.421 |
| ArgR | 226-241 | 14.312 |
| AgaR | 275-298 | 14.113 |
| DeoR | 244-259 | 13.919 |
| H-NS | 327-341 | 13.124 |
| SoxS | 324-341 | 12.924 |
| GadE | 285-304 | 12.696 |
| ArgP | 338-350 | 12.627 |
| Ada | 217-244 | 12.459 |
| IHF | 267-279 | 12.335 |
| Nac | 95-109 | 12.200 |
| UlaR | 304-323 | 11.859 |
| Lrp | 336-347 | 11.590 |
| MarA | 108-128 | 11.270 |
| IdnR | 367-382 | 11.265 |
| NorR | 371-387 | 11.031 |
| GntR | 238-257 | 10.963 |
| DnaA | 194-202 | 10.111 |
| PspF | 330-346 | 9.631 |
| AraC | 334-351 | 9.177 |
| TorR | 333-342 | 9.163 |
| Rob | 243-263 | 8.926 |
| CpxR | 269-283 | 8.507 |
| MetJ | 156-163 | 8.033 |
| NarL | 98-104 | 7.884 |
| FruR | 268-285 | 7.717 |
| FadR | 135-151 | 7.453 |
| UxuR | 116-133 | 7.271 |
| LexA | 62-81 | 7.256 |
| MelR | 330-347 | 7.140 |
| RhaS | 343-359 | 7.043 |
| LacI | 233-253 | 6.912 |
| NarP | 190-196 | 6.464 |
| GalS | 109-124 | 6.376 |
| GalR | 109-124 | 6.376 |
| GlpR | 198-217 | 5.966 |
| FhlA | 346-385 | 5.051 |