| TF name | Position | PWM scan score |
| ArcA | 161-221 | 30.756 |
| CytR | 88-127 | 23.108 |
| OmpR | 162-181 | 21.070 |
| Mlc | 200-222 | 18.148 |
| OxyR | 71-115 | 17.692 |
| GadE | 40-59 | 17.607 |
| CysB | 18-59 | 17.590 |
| AgaR | 44-67 | 17.063 |
| Fis | 161-181 | 16.628 |
| ArgR | 168-183 | 16.548 |
| PhoB | 180-199 | 16.284 |
| SoxS | 111-128 | 15.954 |
| NagC | 88-110 | 15.805 |
| FNR | 10-31 | 15.728 |
| H-NS | 159-173 | 15.198 |
| CRP | 227-248 | 15.177 |
| CpxR | 22-36 | 14.814 |
| RcsB | 86-99 | 14.498 |
| GcvA | 297-325 | 14.426 |
| PhoP | 103-119 | 14.321 |
| Rob | 43-63 | 13.754 |
| IHF | 97-109 | 13.249 |
| UlaR | 16-35 | 13.092 |
| DeoR | 38-53 | 12.604 |
| ArgP | 44-56 | 12.063 |
| AraC | 352-369 | 11.856 |
| MarA | 35-55 | 11.826 |
| Lrp | 222-233 | 11.329 |
| ModE | 165-191 | 11.120 |
| Nac | 164-178 | 11.098 |
| UxuR | 90-107 | 10.817 |
| IdnR | 311-326 | 10.721 |
| TyrR | 229-250 | 10.649 |
| LexA | 166-185 | 10.444 |
| DcuR | 178-232 | 9.550 |
| FadR | 321-337 | 9.470 |
| NarL | 224-230 | 9.376 |
| TorR | 351-360 | 9.359 |
| PspF | 288-304 | 8.919 |
| FruR | 157-174 | 8.859 |
| Fur | 102-116 | 8.690 |
| Ada | 7-34 | 8.625 |
| GlpR | 218-237 | 8.535 |
| MetR | 347-370 | 8.336 |
| XylR | 185-202 | 8.131 |
| GntR | 89-108 | 7.851 |
| NarP | 98-104 | 7.423 |
| MelR | 206-223 | 7.357 |
| NorR | 313-329 | 7.304 |
| GalS | 263-278 | 6.620 |
| GalR | 263-278 | 6.620 |
| DnaA | 194-202 | 6.252 |
| LacI | 298-318 | 6.096 |
| FhlA | 25-64 | 5.509 |
| CaiF | 211-255 | 5.405 |