| TF name | Position | PWM scan score |
| ArcA | 227-287 | 29.180 |
| CysB | 149-190 | 25.511 |
| NagC | 357-379 | 18.999 |
| CytR | 161-200 | 18.872 |
| FNR | 120-141 | 18.796 |
| Mlc | 355-377 | 18.505 |
| OxyR | 118-162 | 17.694 |
| DcuR | 116-170 | 17.249 |
| OmpR | 236-255 | 17.143 |
| RhaS | 270-286 | 16.595 |
| GadE | 337-356 | 16.505 |
| PhoP | 150-166 | 16.476 |
| IHF | 187-199 | 15.968 |
| AgaR | 242-265 | 15.496 |
| Nac | 179-193 | 15.462 |
| AraC | 364-381 | 15.406 |
| UlaR | 126-145 | 15.335 |
| NorR | 112-128 | 14.761 |
| Ada | 117-144 | 14.729 |
| IdnR | 40-55 | 14.505 |
| Fis | 119-139 | 14.450 |
| CpxR | 36-50 | 14.446 |
| PhoB | 239-258 | 14.423 |
| Rob | 234-254 | 13.920 |
| H-NS | 37-51 | 13.732 |
| SoxS | 356-373 | 13.542 |
| MelR | 345-362 | 12.803 |
| ModE | 295-321 | 12.774 |
| GcvA | 251-279 | 12.759 |
| CRP | 353-374 | 12.743 |
| UxuR | 184-201 | 12.442 |
| MarA | 326-346 | 11.811 |
| Lrp | 233-244 | 11.808 |
| ArgP | 125-137 | 11.751 |
| MetR | 98-121 | 11.332 |
| FhlA | 136-175 | 11.295 |
| XylR | 27-44 | 10.954 |
| GlpR | 331-350 | 10.677 |
| RcsB | 261-274 | 10.539 |
| DeoR | 250-265 | 9.995 |
| DnaA | 185-193 | 9.795 |
| ArgR | 179-194 | 9.774 |
| TyrR | 32-53 | 9.377 |
| NarL | 256-262 | 9.333 |
| Fur | 38-52 | 9.171 |
| PspF | 126-142 | 8.815 |
| TorR | 357-366 | 8.709 |
| NarP | 47-53 | 8.372 |
| GalR | 43-58 | 8.106 |
| GalS | 43-58 | 8.106 |
| FruR | 251-268 | 7.652 |
| LexA | 355-374 | 7.567 |
| GntR | 252-271 | 7.549 |
| FadR | 108-124 | 7.140 |
| MetJ | 107-114 | 6.781 |
| LacI | 42-62 | 6.469 |
| NtrC | 367-383 | 6.314 |