| TF name | Position | PWM scan score |
| ArcA | 191-251 | 34.544 |
| CysB | 340-381 | 18.768 |
| Fis | 350-370 | 18.377 |
| ArgP | 359-371 | 17.922 |
| OmpR | 350-369 | 17.640 |
| PhoP | 348-364 | 17.554 |
| Nac | 213-227 | 17.550 |
| GadE | 353-372 | 16.428 |
| H-NS | 70-84 | 15.957 |
| TyrR | 265-286 | 15.641 |
| Mlc | 227-249 | 15.594 |
| Fur | 185-199 | 15.016 |
| ModE | 185-211 | 14.807 |
| CRP | 188-209 | 14.563 |
| NagC | 344-366 | 14.516 |
| GcvA | 188-216 | 14.487 |
| FNR | 347-368 | 14.428 |
| MarA | 81-101 | 13.961 |
| OxyR | 211-255 | 13.399 |
| DcuR | 317-371 | 13.290 |
| XylR | 210-227 | 13.197 |
| CytR | 343-382 | 12.853 |
| RcsB | 67-80 | 12.803 |
| Rob | 191-211 | 12.696 |
| MelR | 243-260 | 12.597 |
| AgaR | 204-227 | 12.480 |
| GlpR | 78-97 | 12.183 |
| AraC | 151-168 | 12.180 |
| IHF | 72-84 | 12.058 |
| Lrp | 188-199 | 12.019 |
| UlaR | 261-280 | 11.746 |
| ArgR | 342-357 | 11.708 |
| Ada | 138-165 | 11.492 |
| SoxS | 352-369 | 11.422 |
| PhoB | 350-369 | 11.417 |
| DeoR | 298-313 | 10.820 |
| LexA | 222-241 | 10.505 |
| PurR | 244-259 | 9.489 |
| NarL | 359-365 | 9.376 |
| GntR | 266-285 | 8.552 |
| TorR | 357-366 | 8.399 |
| PspF | 214-230 | 8.392 |
| DnaA | 356-364 | 8.245 |
| MetR | 256-279 | 7.968 |
| CpxR | 69-83 | 7.838 |
| FruR | 323-340 | 7.622 |
| LacI | 71-91 | 7.342 |
| MetJ | 129-136 | 7.171 |
| IdnR | 267-282 | 7.152 |
| NarP | 350-356 | 6.794 |
| NorR | 113-129 | 6.196 |
| UxuR | 350-367 | 5.828 |
| NtrC | 182-198 | 5.286 |