| TF name | Position | PWM scan score |
| NagC | 343-365 | 22.027 |
| ArcA | 85-145 | 18.658 |
| Mlc | 112-134 | 17.941 |
| UlaR | 53-72 | 17.570 |
| H-NS | 144-158 | 16.757 |
| FNR | 344-365 | 16.445 |
| CysB | 117-158 | 15.785 |
| Nac | 342-356 | 14.472 |
| Ada | 182-209 | 13.567 |
| IHF | 353-365 | 13.476 |
| TyrR | 227-248 | 12.991 |
| MetR | 52-75 | 12.979 |
| UxuR | 165-182 | 12.875 |
| PhoB | 52-71 | 12.783 |
| ArgP | 198-210 | 12.723 |
| MelR | 255-272 | 12.695 |
| CRP | 146-167 | 12.494 |
| Lrp | 196-207 | 12.098 |
| CpxR | 107-121 | 11.582 |
| DcuR | 267-321 | 11.574 |
| Fis | 343-363 | 11.466 |
| OmpR | 342-361 | 11.355 |
| GadE | 340-359 | 11.339 |
| GlpR | 145-164 | 11.307 |
| Fur | 55-69 | 11.300 |
| LacI | 362-382 | 10.840 |
| ModE | 50-76 | 10.676 |
| DeoR | 346-361 | 10.635 |
| RhaS | 362-378 | 10.276 |
| AraC | 98-115 | 10.259 |
| IdnR | 337-352 | 10.214 |
| AgaR | 49-72 | 10.053 |
| PhoP | 27-43 | 10.047 |
| NarL | 21-27 | 9.994 |
| TorR | 238-247 | 9.701 |
| MarA | 131-151 | 9.577 |
| Rob | 197-217 | 9.576 |
| GcvA | 58-86 | 9.562 |
| CytR | 142-181 | 9.535 |
| OxyR | 127-171 | 9.532 |
| NarP | 141-147 | 9.477 |
| ArgR | 152-167 | 9.421 |
| LexA | 50-69 | 9.157 |
| XylR | 145-162 | 8.984 |
| RcsB | 62-75 | 8.518 |
| PspF | 164-180 | 8.281 |
| SoxS | 42-59 | 8.062 |
| MetJ | 221-228 | 7.798 |
| PurR | 57-72 | 7.224 |
| NorR | 292-308 | 7.079 |
| DnaA | 148-156 | 7.045 |
| FhlA | 232-271 | 6.684 |
| GalS | 309-324 | 6.551 |
| GalR | 309-324 | 6.551 |
| FadR | 118-134 | 6.437 |
| GntR | 335-354 | 5.895 |
| NtrC | 41-57 | 5.890 |