| TF name | Position | PWM scan score |
| ArcA | 249-309 | 28.897 |
| Fur | 256-270 | 25.727 |
| CytR | 261-300 | 19.388 |
| CysB | 248-289 | 18.981 |
| FNR | 343-364 | 18.165 |
| Rob | 259-279 | 17.029 |
| PspF | 152-168 | 16.957 |
| Fis | 265-285 | 16.849 |
| IHF | 279-291 | 16.749 |
| H-NS | 283-297 | 16.706 |
| Nac | 248-262 | 15.544 |
| CRP | 247-268 | 15.276 |
| OmpR | 160-179 | 15.209 |
| SoxS | 270-287 | 15.176 |
| AraC | 55-72 | 15.074 |
| Mlc | 246-268 | 15.036 |
| NagC | 49-71 | 15.000 |
| GcvA | 258-286 | 14.507 |
| OxyR | 258-302 | 14.250 |
| GadE | 275-294 | 13.339 |
| AgaR | 153-176 | 13.163 |
| RcsB | 260-273 | 12.734 |
| PhoP | 270-286 | 12.709 |
| TyrR | 154-175 | 12.567 |
| Lrp | 259-270 | 11.505 |
| DcuR | 249-303 | 11.353 |
| GntR | 46-65 | 11.303 |
| UxuR | 276-293 | 11.267 |
| TorR | 255-264 | 11.212 |
| MetJ | 363-370 | 11.100 |
| UlaR | 333-352 | 10.797 |
| LacI | 343-363 | 10.746 |
| GlpR | 255-274 | 10.654 |
| ArgR | 123-138 | 10.048 |
| ModE | 52-78 | 9.848 |
| NarL | 264-270 | 9.444 |
| DeoR | 304-319 | 9.288 |
| ArgP | 264-276 | 9.099 |
| GalS | 11-26 | 8.969 |
| GalR | 11-26 | 8.969 |
| XylR | 125-142 | 8.896 |
| RhaS | 19-35 | 8.713 |
| MarA | 263-283 | 8.659 |
| NarP | 307-313 | 8.594 |
| PhoB | 262-281 | 8.543 |
| CpxR | 282-296 | 8.464 |
| IdnR | 349-364 | 8.250 |
| Ada | 291-318 | 7.718 |
| DnaA | 53-61 | 7.194 |
| NorR | 261-277 | 6.918 |
| FadR | 143-159 | 6.873 |
| FruR | 303-320 | 6.416 |
| FhlA | 341-380 | 6.337 |
| MalT | 64-73 | 6.014 |
| NtrC | 151-167 | 5.588 |
| MetR | 277-300 | 5.141 |