| TF name | Position | PWM scan score |
| ArcA | 148-208 | 32.571 |
| FNR | 175-196 | 25.056 |
| CysB | 143-184 | 18.569 |
| OxyR | 171-215 | 16.493 |
| Mlc | 144-166 | 15.835 |
| PhoP | 351-367 | 15.808 |
| CRP | 172-193 | 15.261 |
| GalR | 31-46 | 15.006 |
| GalS | 31-46 | 15.006 |
| NagC | 365-387 | 14.804 |
| CytR | 245-284 | 14.746 |
| OmpR | 364-383 | 14.530 |
| CpxR | 353-367 | 13.964 |
| DeoR | 239-254 | 13.900 |
| H-NS | 381-395 | 13.473 |
| AgaR | 162-185 | 13.366 |
| XylR | 187-204 | 12.887 |
| GadE | 59-78 | 12.702 |
| DnaA | 177-185 | 12.693 |
| IHF | 184-196 | 12.568 |
| Ada | 280-307 | 12.395 |
| IdnR | 359-374 | 12.346 |
| Fis | 240-260 | 12.305 |
| UlaR | 290-309 | 12.299 |
| Lrp | 350-361 | 12.212 |
| RcsB | 274-287 | 12.087 |
| ArgR | 378-393 | 12.036 |
| ModE | 159-185 | 12.001 |
| GlpR | 152-171 | 11.862 |
| RhaS | 102-118 | 11.489 |
| Nac | 100-114 | 11.174 |
| FadR | 19-35 | 11.167 |
| ArgP | 34-46 | 11.165 |
| MarA | 6-26 | 11.078 |
| Rob | 330-350 | 10.846 |
| PspF | 343-359 | 10.336 |
| MelR | 21-38 | 10.329 |
| TorR | 101-110 | 10.214 |
| PhoB | 166-185 | 10.142 |
| Fur | 164-178 | 9.814 |
| AraC | 170-187 | 9.004 |
| NorR | 218-234 | 8.959 |
| GcvA | 364-392 | 8.901 |
| SoxS | 370-387 | 8.884 |
| DcuR | 6-60 | 8.858 |
| MetR | 106-129 | 8.536 |
| LacI | 298-318 | 8.500 |
| UxuR | 332-349 | 8.396 |
| LexA | 313-332 | 8.237 |
| NarL | 177-183 | 8.131 |
| TyrR | 242-263 | 7.642 |
| GntR | 188-207 | 7.476 |
| NarP | 92-98 | 7.347 |
| MalT | 319-328 | 6.053 |
| MetJ | 36-43 | 5.674 |
| NtrC | 139-155 | 5.524 |
| FruR | 319-336 | 5.207 |