| TF name | Position | PWM scan score |
| ArcA | 49-109 | 24.799 |
| FNR | 252-273 | 21.403 |
| H-NS | 265-279 | 20.193 |
| DcuR | 182-236 | 17.880 |
| NagC | 202-224 | 17.812 |
| OmpR | 265-284 | 17.646 |
| Fur | 92-106 | 16.799 |
| CysB | 253-294 | 16.586 |
| MelR | 192-209 | 15.516 |
| ArgP | 266-278 | 15.320 |
| GlpR | 251-270 | 15.162 |
| PhoP | 365-381 | 14.463 |
| MarA | 77-97 | 14.376 |
| IHF | 252-264 | 14.300 |
| CytR | 356-395 | 14.219 |
| Nac | 17-31 | 13.884 |
| Fis | 260-280 | 13.610 |
| CRP | 351-372 | 13.609 |
| ModE | 168-194 | 13.479 |
| OxyR | 253-297 | 13.420 |
| FadR | 145-161 | 13.278 |
| GcvA | 369-397 | 13.187 |
| Rob | 366-386 | 13.099 |
| GadE | 48-67 | 12.814 |
| AgaR | 266-289 | 12.602 |
| GntR | 127-146 | 12.395 |
| Mlc | 268-290 | 12.366 |
| PhoB | 268-287 | 12.013 |
| SoxS | 361-378 | 11.658 |
| DeoR | 316-331 | 11.566 |
| NtrC | 63-79 | 11.311 |
| XylR | 41-58 | 11.202 |
| UlaR | 264-283 | 11.133 |
| UxuR | 180-197 | 10.998 |
| Lrp | 282-293 | 10.953 |
| RcsB | 262-275 | 10.810 |
| TorR | 231-240 | 10.649 |
| MetR | 181-204 | 10.571 |
| DnaA | 50-58 | 9.795 |
| NarP | 175-181 | 9.477 |
| ArgR | 271-286 | 9.419 |
| Ada | 159-186 | 9.326 |
| NarL | 20-26 | 9.129 |
| TyrR | 85-106 | 9.036 |
| PspF | 111-127 | 8.402 |
| AraC | 267-284 | 8.269 |
| FruR | 73-90 | 8.244 |
| MetJ | 8-15 | 8.203 |
| CpxR | 355-369 | 8.200 |
| NorR | 278-294 | 8.093 |
| LacI | 162-182 | 7.664 |
| GalR | 354-369 | 7.416 |
| GalS | 354-369 | 7.416 |
| FhlA | 197-236 | 6.934 |
| IdnR | 371-386 | 6.608 |
| CueR | 236-254 | 6.285 |
| MalT | 73-82 | 5.137 |