| TF name | Position | PWM scan score |
| ArcA | 262-322 | 27.946 |
| SoxS | 267-284 | 17.381 |
| Rob | 224-244 | 16.934 |
| CpxR | 283-297 | 16.682 |
| DcuR | 259-313 | 16.604 |
| OmpR | 273-292 | 16.259 |
| CysB | 29-70 | 16.120 |
| AgaR | 262-285 | 15.983 |
| Nac | 105-119 | 15.750 |
| DeoR | 283-298 | 15.568 |
| GcvA | 253-281 | 14.359 |
| Fis | 113-133 | 14.311 |
| PhoP | 160-176 | 14.264 |
| GadE | 365-384 | 14.202 |
| CRP | 279-300 | 13.963 |
| Ada | 111-138 | 13.886 |
| CytR | 264-303 | 13.801 |
| H-NS | 363-377 | 13.476 |
| UlaR | 34-53 | 13.318 |
| UxuR | 7-24 | 13.147 |
| OxyR | 90-134 | 12.715 |
| FNR | 43-64 | 12.657 |
| IHF | 10-22 | 12.207 |
| Mlc | 362-384 | 12.078 |
| PhoB | 262-281 | 12.068 |
| ArgP | 319-331 | 12.063 |
| MelR | 271-288 | 12.058 |
| MarA | 210-230 | 11.755 |
| GlpR | 362-381 | 11.256 |
| ModE | 364-390 | 11.221 |
| TorR | 27-36 | 11.180 |
| RcsB | 173-186 | 10.893 |
| XylR | 309-326 | 10.812 |
| Lrp | 181-192 | 10.294 |
| AraC | 101-118 | 10.026 |
| GntR | 326-345 | 9.775 |
| NorR | 246-262 | 9.765 |
| NarP | 328-334 | 9.746 |
| GalR | 281-296 | 9.422 |
| GalS | 281-296 | 9.422 |
| ArgR | 120-135 | 9.379 |
| NagC | 107-129 | 9.258 |
| Fur | 175-189 | 9.214 |
| IdnR | 25-40 | 9.143 |
| NarL | 323-329 | 8.792 |
| FadR | 338-354 | 8.457 |
| TyrR | 24-45 | 7.974 |
| DnaA | 283-291 | 7.900 |
| LacI | 363-383 | 7.822 |
| MetR | 160-183 | 6.862 |
| PspF | 15-31 | 6.515 |
| LexA | 316-335 | 6.403 |
| FruR | 123-140 | 6.175 |
| MalT | 241-250 | 5.888 |
| PurR | 38-53 | 5.794 |
| NtrC | 104-120 | 5.594 |